miRNA display CGI


Results 81 - 100 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 31246 0.68 0.241981
Target:  5'- gGCgCGgCGGUGCCGCCc-CACaCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGucGUG-GCGG- -5'
23256 3' -64.7 NC_005259.1 + 30152 0.68 0.253811
Target:  5'- aGCUCgACCGG-GCCGCCuacAG-GCCGCCa -3'
miRNA:   3'- gCGGG-UGGCCgUGGCGG---UCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 5440 0.68 0.250213
Target:  5'- gCGCCCGCUGcCGCCGacagaucgcaugagCAGCACCaaugGCCg -3'
miRNA:   3'- -GCGGGUGGCcGUGGCg-------------GUCGUGG----CGG- -5'
23256 3' -64.7 NC_005259.1 + 57126 0.68 0.247838
Target:  5'- uCGCCCAUCGGCgggACCGagCAGUAgUgGCCc -3'
miRNA:   3'- -GCGGGUGGCCG---UGGCg-GUCGU-GgCGG- -5'
23256 3' -64.7 NC_005259.1 + 24816 0.68 0.247838
Target:  5'- uGCC--CCGGCACgccgUGCCcGCACCGaCCa -3'
miRNA:   3'- gCGGguGGCCGUG----GCGGuCGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 51729 0.68 0.241402
Target:  5'- gGCCCACaugauGGcCACCGCCAcgcucucggcagcGUugCGCUc -3'
miRNA:   3'- gCGGGUGg----CC-GUGGCGGU-------------CGugGCGG- -5'
23256 3' -64.7 NC_005259.1 + 13227 0.68 0.266113
Target:  5'- gGCCUcgACCGGcCACCGUgAGgGCCGa- -3'
miRNA:   3'- gCGGG--UGGCC-GUGGCGgUCgUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 28267 0.68 0.266113
Target:  5'- uGCCCGaaaccgUCGGCuCUGCCgauguaggccacGGUGCCGCCc -3'
miRNA:   3'- gCGGGU------GGCCGuGGCGG------------UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 41715 0.68 0.266113
Target:  5'- cCGCCgcaUACCGGCGgCGgggaGGaCACCGCCu -3'
miRNA:   3'- -GCGG---GUGGCCGUgGCgg--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45380 0.68 0.253811
Target:  5'- uGCCCGaggaauuucUCGGgguCGCCGCCgAGCgcgcugaugGCCGCCg -3'
miRNA:   3'- gCGGGU---------GGCC---GUGGCGG-UCG---------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56283 0.68 0.259288
Target:  5'- gGCCCguAUCGGCACCagcagaccacgugGCCGGacccucguCGCCGUCg -3'
miRNA:   3'- gCGGG--UGGCCGUGG-------------CGGUC--------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37237 0.68 0.241981
Target:  5'- gGCCCguGCCGGauuggcuGCCGCCGuuGCcaggcuugagGCCGCCc -3'
miRNA:   3'- gCGGG--UGGCCg------UGGCGGU--CG----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 4502 0.68 0.241981
Target:  5'- uCGCCaccgCGCCgggaguGGCGCUGCgCGGCACC-CCg -3'
miRNA:   3'- -GCGG----GUGG------CCGUGGCG-GUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 4658 0.68 0.247838
Target:  5'- gCGCCUACgGGCACggUGUCuGCACUGgCu -3'
miRNA:   3'- -GCGGGUGgCCGUG--GCGGuCGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 39881 0.68 0.247838
Target:  5'- gCGCCCACaccgaaucguUGuCGCCGCC-GC-CCGCCu -3'
miRNA:   3'- -GCGGGUG----------GCcGUGGCGGuCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50387 0.68 0.247838
Target:  5'- gGCCCACgugucgCGGC-UCGCCgAGCG-CGCCg -3'
miRNA:   3'- gCGGGUG------GCCGuGGCGG-UCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22468 0.68 0.259902
Target:  5'- gCGCCCGCgCGGUcugACCGUCcGCAUcaauaaccucaaCGCCc -3'
miRNA:   3'- -GCGGGUG-GCCG---UGGCGGuCGUG------------GCGG- -5'
23256 3' -64.7 NC_005259.1 + 34756 0.68 0.265486
Target:  5'- gCGCCaAUUGGCAUCGUcggcgagCAGCACUGCa -3'
miRNA:   3'- -GCGGgUGGCCGUGGCG-------GUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 33409 0.68 0.266113
Target:  5'- uGUCCACCGcGCguacGCCucCCAGCGCgGCUc -3'
miRNA:   3'- gCGGGUGGC-CG----UGGc-GGUCGUGgCGG- -5'
23256 3' -64.7 NC_005259.1 + 35038 0.69 0.225101
Target:  5'- aGCCCgauaGCCGGaugaugUCGCCGGacaCGCCGCCc -3'
miRNA:   3'- gCGGG----UGGCCgu----GGCGGUC---GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.