Results 61 - 80 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23256 | 3' | -64.7 | NC_005259.1 | + | 58700 | 0.67 | 0.292155 |
Target: 5'- gGCUCgucGCCGcCGCCGUCAcCAUCGCCg -3' miRNA: 3'- gCGGG---UGGCcGUGGCGGUcGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 41419 | 0.67 | 0.292155 |
Target: 5'- uGCCCACgaugugcaCGG-GCCGCCAuuuGCGCC-CCg -3' miRNA: 3'- gCGGGUG--------GCCgUGGCGGU---CGUGGcGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 23213 | 0.67 | 0.292155 |
Target: 5'- gGCCCaaggACgGGUACCGUCcGCucgaCGCCa -3' miRNA: 3'- gCGGG----UGgCCGUGGCGGuCGug--GCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 58807 | 0.67 | 0.292155 |
Target: 5'- uGCCUcgGCgGGCucgcGCUGCuCGGCACCcucGCCg -3' miRNA: 3'- gCGGG--UGgCCG----UGGCG-GUCGUGG---CGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 14861 | 0.67 | 0.292155 |
Target: 5'- uGCUCGCgaGGUucgcGCUGCCcgAGcCGCCGCCg -3' miRNA: 3'- gCGGGUGg-CCG----UGGCGG--UC-GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45505 | 0.67 | 0.29897 |
Target: 5'- gGUCgCugUGGcCACCgcGCCGGUguugGCCGCCg -3' miRNA: 3'- gCGG-GugGCC-GUGG--CGGUCG----UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 21523 | 0.68 | 0.23624 |
Target: 5'- aCGCCUGCUGuaGCgGCgAGgACUGCCg -3' miRNA: 3'- -GCGGGUGGCcgUGgCGgUCgUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 4502 | 0.68 | 0.241981 |
Target: 5'- uCGCCaccgCGCCgggaguGGCGCUGCgCGGCACC-CCg -3' miRNA: 3'- -GCGG----GUGG------CCGUGGCG-GUCGUGGcGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 37237 | 0.68 | 0.241981 |
Target: 5'- gGCCCguGCCGGauuggcuGCCGCCGuuGCcaggcuugagGCCGCCc -3' miRNA: 3'- gCGGG--UGGCCg------UGGCGGU--CG----------UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 31246 | 0.68 | 0.241981 |
Target: 5'- gGCgCGgCGGUGCCGCCc-CACaCGCCg -3' miRNA: 3'- gCGgGUgGCCGUGGCGGucGUG-GCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 16237 | 0.68 | 0.241981 |
Target: 5'- aCGCaCC-CCGGUGCUGC--GCACCGaCCg -3' miRNA: 3'- -GCG-GGuGGCCGUGGCGguCGUGGC-GG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 18848 | 0.68 | 0.241981 |
Target: 5'- gGUCuCGCCGGUGCCGUgcaaCGGUugCGCg -3' miRNA: 3'- gCGG-GUGGCCGUGGCG----GUCGugGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 8288 | 0.68 | 0.241981 |
Target: 5'- gGUgCGCgGGCAcCCGCaCGGaaaCGCCGCCu -3' miRNA: 3'- gCGgGUGgCCGU-GGCG-GUC---GUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 27946 | 0.68 | 0.241981 |
Target: 5'- aGCUCGCCGGUgaacggauCUGUCAGCGUgGCCa -3' miRNA: 3'- gCGGGUGGCCGu-------GGCGGUCGUGgCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 768 | 0.68 | 0.23624 |
Target: 5'- gCGUCCACC-GCGCCGa-GGCgGCUGCCc -3' miRNA: 3'- -GCGGGUGGcCGUGGCggUCG-UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 66631 | 0.68 | 0.230614 |
Target: 5'- uCGUCC-CUGGcCACCGCuCGGauuGCUGCCg -3' miRNA: 3'- -GCGGGuGGCC-GUGGCG-GUCg--UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 39881 | 0.68 | 0.247838 |
Target: 5'- gCGCCCACaccgaaucguUGuCGCCGCC-GC-CCGCCu -3' miRNA: 3'- -GCGGGUG----------GCcGUGGCGGuCGuGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 35727 | 0.68 | 0.230614 |
Target: 5'- cCGCCCGacgacCCGGCGCUGCCcGGCcCCa-- -3' miRNA: 3'- -GCGGGU-----GGCCGUGGCGG-UCGuGGcgg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 62925 | 0.68 | 0.23454 |
Target: 5'- uCGUCC-UCGGUuugcggcucgcgcuGCUGCCgGGCACCGCUg -3' miRNA: 3'- -GCGGGuGGCCG--------------UGGCGG-UCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45905 | 0.68 | 0.23624 |
Target: 5'- gGUCgGCgGGCACCGCUGGUAgaccgaggcuCUGCCc -3' miRNA: 3'- gCGGgUGgCCGUGGCGGUCGU----------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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