miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 12322 0.72 0.129701
Target:  5'- uGCgCACCGcCGCCaGCuCAcGCACCGCCg -3'
miRNA:   3'- gCGgGUGGCcGUGG-CG-GU-CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22212 0.72 0.13308
Target:  5'- uGgCCACCGcGCACCGCC-GCgagGCUGUCg -3'
miRNA:   3'- gCgGGUGGC-CGUGGCGGuCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23650 0.72 0.13308
Target:  5'- gGCCCGCCgacGGCgACgGCUGG-ACCGCCg -3'
miRNA:   3'- gCGGGUGG---CCG-UGgCGGUCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 40880 0.72 0.13308
Target:  5'- aGCUCACCGGcCACCGUggcgggguCGGCAgCGUCc -3'
miRNA:   3'- gCGGGUGGCC-GUGGCG--------GUCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22740 0.72 0.13308
Target:  5'- aGCCCGuauacgaGGCguACCGaaaCGGCACCGCCa -3'
miRNA:   3'- gCGGGUgg-----CCG--UGGCg--GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 31550 0.72 0.136539
Target:  5'- uCGCCUugUagGGUGCCGCU-GCACCGCg -3'
miRNA:   3'- -GCGGGugG--CCGUGGCGGuCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 43811 0.72 0.136539
Target:  5'- aGUCCuuGCCGGgcgUACCGCCGGacacaggGCCGCCg -3'
miRNA:   3'- gCGGG--UGGCC---GUGGCGGUCg------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 15975 0.72 0.136539
Target:  5'- cCGCCCAguUCGGUcgagugaucACCGCCGGUgGCCGCa -3'
miRNA:   3'- -GCGGGU--GGCCG---------UGGCGGUCG-UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 12930 0.72 0.14008
Target:  5'- cCGCCCccACCGG-ACC-CCGGCugCGCg -3'
miRNA:   3'- -GCGGG--UGGCCgUGGcGGUCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 1837 0.71 0.14334
Target:  5'- uGCUCGCCGcUGCCGCCgaGGCcgagaaaGCCGCCg -3'
miRNA:   3'- gCGGGUGGCcGUGGCGG--UCG-------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46814 0.71 0.14334
Target:  5'- gCGCaCCACCGGCcaccugagugagcGCC-CCGGCgaGCUGCCc -3'
miRNA:   3'- -GCG-GGUGGCCG-------------UGGcGGUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37150 0.71 0.143706
Target:  5'- gCGCauaGCCGuCACCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGgg-UGGCcGUGGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 25166 0.71 0.143706
Target:  5'- aGCCCGuuGGguCCGaCCcGUacGCCGCCg -3'
miRNA:   3'- gCGGGUggCCguGGC-GGuCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 9258 0.71 0.147417
Target:  5'- gCGCCCgaACCGGUcCCGaaaCGGCgaguuaugcgguGCCGCCa -3'
miRNA:   3'- -GCGGG--UGGCCGuGGCg--GUCG------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 47943 0.71 0.147417
Target:  5'- aGCCgAUgaCGGCggugccgaugGCCGCC-GCGCCGCCc -3'
miRNA:   3'- gCGGgUG--GCCG----------UGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 7569 0.71 0.151216
Target:  5'- aCG-CCACCGuucGCGCCGCCGcCGCCGaCCu -3'
miRNA:   3'- -GCgGGUGGC---CGUGGCGGUcGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 30765 0.71 0.151216
Target:  5'- uGCCgaCGCCgguGGCACCGCUGccguuguucgcGUACCGCCg -3'
miRNA:   3'- gCGG--GUGG---CCGUGGCGGU-----------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50090 0.71 0.15471
Target:  5'- aGCUCGCCGaugguGCGCCcgagguuGCCcguacgcacgGGCACCGCCa -3'
miRNA:   3'- gCGGGUGGC-----CGUGG-------CGG----------UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 30184 0.71 0.155103
Target:  5'- cCGCCCGCaCaGCAcuaccCCGUCGGUGcCCGCCg -3'
miRNA:   3'- -GCGGGUG-GcCGU-----GGCGGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35844 0.71 0.155103
Target:  5'- cCGCCCGCgagcacaGGUccGCCGCCGcguccaccGCAgCCGCCg -3'
miRNA:   3'- -GCGGGUGg------CCG--UGGCGGU--------CGU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.