miRNA display CGI


Results 61 - 80 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 20125 0.67 0.275008
Target:  5'- gGCCgCACUGGCuGCCgucgcgaugacggcaGCCGGUGCCcugGCCa -3'
miRNA:   3'- gCGG-GUGGCCG-UGG---------------CGGUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 20773 0.69 0.225101
Target:  5'- cCGCCCACCgGGUGgCGCgucgaCAGCAagaGCCa -3'
miRNA:   3'- -GCGGGUGG-CCGUgGCG-----GUCGUgg-CGG- -5'
23256 3' -64.7 NC_005259.1 + 21523 0.68 0.23624
Target:  5'- aCGCCUGCUGuaGCgGCgAGgACUGCCg -3'
miRNA:   3'- -GCGGGUGGCcgUGgCGgUCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 21988 0.74 0.098476
Target:  5'- -cCCCACCGGCACCGgcaagucgacggucaUCGgucGCACUGCCg -3'
miRNA:   3'- gcGGGUGGCCGUGGC---------------GGU---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22212 0.72 0.13308
Target:  5'- uGgCCACCGcGCACCGCC-GCgagGCUGUCg -3'
miRNA:   3'- gCgGGUGGC-CGUGGCGGuCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22468 0.68 0.259902
Target:  5'- gCGCCCGCgCGGUcugACCGUCcGCAUcaauaaccucaaCGCCc -3'
miRNA:   3'- -GCGGGUG-GCCG---UGGCGGuCGUG------------GCGG- -5'
23256 3' -64.7 NC_005259.1 + 22656 0.73 0.11397
Target:  5'- cCGCCCACCa-CAUCGCCGacGCacugACCGCCg -3'
miRNA:   3'- -GCGGGUGGccGUGGCGGU--CG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22740 0.72 0.13308
Target:  5'- aGCCCGuauacgaGGCguACCGaaaCGGCACCGCCa -3'
miRNA:   3'- gCGGGUgg-----CCG--UGGCg--GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22848 0.66 0.320148
Target:  5'- gGCCCACCcGCAgCCGCaaccuGUACuCGCa -3'
miRNA:   3'- gCGGGUGGcCGU-GGCGgu---CGUG-GCGg -5'
23256 3' -64.7 NC_005259.1 + 23213 0.67 0.292155
Target:  5'- gGCCCaaggACgGGUACCGUCcGCucgaCGCCa -3'
miRNA:   3'- gCGGG----UGgCCGUGGCGGuCGug--GCGG- -5'
23256 3' -64.7 NC_005259.1 + 23473 0.66 0.342431
Target:  5'- gGCCU--CGGCAUUGUCGGUGCCgacGCCa -3'
miRNA:   3'- gCGGGugGCCGUGGCGGUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 23650 0.72 0.13308
Target:  5'- gGCCCGCCgacGGCgACgGCUGG-ACCGCCg -3'
miRNA:   3'- gCGGGUGG---CCG-UGgCGGUCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23758 0.66 0.312966
Target:  5'- aCGCCCcgcagACCGGC-CC-CaCAGCcCCGCa -3'
miRNA:   3'- -GCGGG-----UGGCCGuGGcG-GUCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 23889 0.67 0.278892
Target:  5'- cCGCugCCGCCcgaGCCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCG--GGUGGccgUGGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 24550 0.66 0.320148
Target:  5'- aGUCCAgaUCGGCGggguguacUCGUgGGCACCGCa -3'
miRNA:   3'- gCGGGU--GGCCGU--------GGCGgUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 24627 0.69 0.21441
Target:  5'- aGCUCAUCGGCAUC-CC-GCACC-CCg -3'
miRNA:   3'- gCGGGUGGCCGUGGcGGuCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 24816 0.68 0.247838
Target:  5'- uGCC--CCGGCACgccgUGCCcGCACCGaCCa -3'
miRNA:   3'- gCGGguGGCCGUG----GCGGuCGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 25057 0.71 0.158678
Target:  5'- aGCCCguuuucaggcaagGgUGGCGCUGCCAcCGCCGCUg -3'
miRNA:   3'- gCGGG-------------UgGCCGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 25166 0.71 0.143706
Target:  5'- aGCCCGuuGGguCCGaCCcGUacGCCGCCg -3'
miRNA:   3'- gCGGGUggCCguGGC-GGuCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 25913 0.73 0.108191
Target:  5'- cCGCCUgaGCCGcCGCCGCCgguccggugAGCGCaCGCCg -3'
miRNA:   3'- -GCGGG--UGGCcGUGGCGG---------UCGUG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.