miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 13111 0.67 0.285463
Target:  5'- gGCCCGCuCGGCGgcuaCGaCCAGCGCaCGgUg -3'
miRNA:   3'- gCGGGUG-GCCGUg---GC-GGUCGUG-GCgG- -5'
23256 3' -64.7 NC_005259.1 + 13227 0.68 0.266113
Target:  5'- gGCCUcgACCGGcCACCGUgAGgGCCGa- -3'
miRNA:   3'- gCGGG--UGGCC-GUGGCGgUCgUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 13335 0.66 0.327453
Target:  5'- -aCCCACggCGGgACCGCCc-CGCCGCa -3'
miRNA:   3'- gcGGGUG--GCCgUGGCGGucGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 13411 0.75 0.076856
Target:  5'- gGCCUuccugGCCGGgguCGCCGCCGGgGCCGCg -3'
miRNA:   3'- gCGGG-----UGGCC---GUGGCGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 14319 0.7 0.175923
Target:  5'- cCGCCCucgacGCCGccGC-CCGCguGCggGCCGCCg -3'
miRNA:   3'- -GCGGG-----UGGC--CGuGGCGguCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 14861 0.67 0.292155
Target:  5'- uGCUCGCgaGGUucgcGCUGCCcgAGcCGCCGCCg -3'
miRNA:   3'- gCGGGUGg-CCG----UGGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 15849 0.66 0.342431
Target:  5'- gGCUCG--GGCAUCGCCaAGCucGCCGCUc -3'
miRNA:   3'- gCGGGUggCCGUGGCGG-UCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 15975 0.72 0.136539
Target:  5'- cCGCCCAguUCGGUcgagugaucACCGCCGGUgGCCGCa -3'
miRNA:   3'- -GCGGGU--GGCCG---------UGGCGGUCG-UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 16237 0.68 0.241981
Target:  5'- aCGCaCC-CCGGUGCUGC--GCACCGaCCg -3'
miRNA:   3'- -GCG-GGuGGCCGUGGCGguCGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 16439 0.8 0.032512
Target:  5'- gGCCCaaACCgGGCACCGUCGGCAucgguaccCCGCCg -3'
miRNA:   3'- gCGGG--UGG-CCGUGGCGGUCGU--------GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16567 0.76 0.069104
Target:  5'- cCGCCCACCgGGCAgaUCGCCgaGGaCAUCGCCc -3'
miRNA:   3'- -GCGGGUGG-CCGU--GGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16741 0.66 0.319425
Target:  5'- aCGCUCAagaucgcCCGGCugCGUgAGaCACCGgaCCa -3'
miRNA:   3'- -GCGGGU-------GGCCGugGCGgUC-GUGGC--GG- -5'
23256 3' -64.7 NC_005259.1 + 17314 0.67 0.305207
Target:  5'- aCGCCgAgCGGUACCccgaggguguGCCGGUcaacgucGCCGUCg -3'
miRNA:   3'- -GCGGgUgGCCGUGG----------CGGUCG-------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 17761 0.67 0.305906
Target:  5'- aGgCCGCCGcGCGCCggGCCGagcGCACCGa- -3'
miRNA:   3'- gCgGGUGGC-CGUGG--CGGU---CGUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 18441 0.67 0.305906
Target:  5'- aCGCCucgugcaaCACCGcGCacACCGCCGGUccugaGCCGUg -3'
miRNA:   3'- -GCGG--------GUGGC-CG--UGGCGGUCG-----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 18546 0.74 0.090063
Target:  5'- aGCCCGCCGacgaacCAUCGCCGuaCGCCGCCg -3'
miRNA:   3'- gCGGGUGGCc-----GUGGCGGUc-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 18848 0.68 0.241981
Target:  5'- gGUCuCGCCGGUGCCGUgcaaCGGUugCGCg -3'
miRNA:   3'- gCGG-GUGGCCGUGGCG----GUCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 19557 0.67 0.305906
Target:  5'- uGCCCGCa---GCCGUcgggaCAGCGCCGCa -3'
miRNA:   3'- gCGGGUGgccgUGGCG-----GUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 19645 0.89 0.006461
Target:  5'- aCGCUCACCGGCACCGCCucgGGCAgCCGCUa -3'
miRNA:   3'- -GCGGGUGGCCGUGGCGG---UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 19870 0.82 0.022205
Target:  5'- gCGCCCGCCGGgAUCGCCGaCGCCGCg -3'
miRNA:   3'- -GCGGGUGGCCgUGGCGGUcGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.