miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 7419 0.67 0.285463
Target:  5'- uCGUcgCCGUCGGCGgUGCCcGCGCCGCa -3'
miRNA:   3'- -GCG--GGUGGCCGUgGCGGuCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 7569 0.71 0.151216
Target:  5'- aCG-CCACCGuucGCGCCGCCGcCGCCGaCCu -3'
miRNA:   3'- -GCgGGUGGC---CGUGGCGGUcGUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 8040 0.72 0.126403
Target:  5'- uCGCgaaCuguCCGaCACCGCCGGuCGCCGCCg -3'
miRNA:   3'- -GCGg--Gu--GGCcGUGGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8288 0.68 0.241981
Target:  5'- gGUgCGCgGGCAcCCGCaCGGaaaCGCCGCCu -3'
miRNA:   3'- gCGgGUGgCCGU-GGCG-GUC---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8351 0.69 0.204159
Target:  5'- aCGCugCUGCCGGUAUCGCuCGGCGgCgGCCu -3'
miRNA:   3'- -GCG--GGUGGCCGUGGCG-GUCGU-GgCGG- -5'
23256 3' -64.7 NC_005259.1 + 8560 0.79 0.041491
Target:  5'- aGCCCAU--GCGCCG-CAGCACCGCCa -3'
miRNA:   3'- gCGGGUGgcCGUGGCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8864 0.7 0.171569
Target:  5'- uGCCCGCCGccuGCCGCacccaCGCCGCCu -3'
miRNA:   3'- gCGGGUGGCcg-UGGCGguc--GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 9258 0.71 0.147417
Target:  5'- gCGCCCgaACCGGUcCCGaaaCGGCgaguuaugcgguGCCGCCa -3'
miRNA:   3'- -GCGGG--UGGCCGuGGCg--GUCG------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 9534 0.67 0.29897
Target:  5'- cCGCCggguCACCGGagaGCUGcCCGGCcucgACCGCg -3'
miRNA:   3'- -GCGG----GUGGCCg--UGGC-GGUCG----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 9681 0.7 0.171139
Target:  5'- uGCgCUGCCGGUcgaggucGCCGCUcacugGGCACCGUCc -3'
miRNA:   3'- gCG-GGUGGCCG-------UGGCGG-----UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 9799 0.81 0.027617
Target:  5'- uGCCCGCuCGcGCcacuACCGCCcGCACCGCCg -3'
miRNA:   3'- gCGGGUG-GC-CG----UGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 10133 0.66 0.312254
Target:  5'- aGCCCACgCGcGCGcCCGCCGuucgcacGCACUGaCg -3'
miRNA:   3'- gCGGGUG-GC-CGU-GGCGGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 10722 0.66 0.312254
Target:  5'- gGCCCGCaugauguCGGUgaucACCGC--GCGCUGCCg -3'
miRNA:   3'- gCGGGUG-------GCCG----UGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 11861 0.69 0.208718
Target:  5'- -aCCCGUCGGCgaacgugACCGCC-GCACCGUCc -3'
miRNA:   3'- gcGGGUGGCCG-------UGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12122 0.74 0.101089
Target:  5'- gGCCuucucccacagCACCGGgucugcuuucuugauCACCGCCgacGGCACCGCCc -3'
miRNA:   3'- gCGG-----------GUGGCC---------------GUGGCGG---UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12225 0.72 0.120037
Target:  5'- cCGCCCGCUGGCcgggcaAUgGUCA-CACCGCCu -3'
miRNA:   3'- -GCGGGUGGCCG------UGgCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12322 0.72 0.129701
Target:  5'- uGCgCACCGcCGCCaGCuCAcGCACCGCCg -3'
miRNA:   3'- gCGgGUGGCcGUGG-CG-GU-CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12546 0.72 0.120037
Target:  5'- aGCCC-CaCGGCAUUGCCgggguGGC-CCGCCa -3'
miRNA:   3'- gCGGGuG-GCCGUGGCGG-----UCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12930 0.72 0.14008
Target:  5'- cCGCCCccACCGG-ACC-CCGGCugCGCg -3'
miRNA:   3'- -GCGGG--UGGCCgUGGcGGUCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 12982 0.72 0.119108
Target:  5'- gCGCCCACCGuggugcucgcguucGCACUcgGCUA-CGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC--------------CGUGG--CGGUcGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.