miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 60132 0.67 0.292155
Target:  5'- gGCCUcguCCuGCGCgGCCuuGGcCGCCGCCu -3'
miRNA:   3'- gCGGGu--GGcCGUGgCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 59511 0.7 0.189579
Target:  5'- cCGCCCGgCGaauuGCugUugGCCuuAGCGCCGCCa -3'
miRNA:   3'- -GCGGGUgGC----CGugG--CGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 58862 0.67 0.272442
Target:  5'- gGCUCGCCGuCGucgucgUCGCCucGGCAUCGCCg -3'
miRNA:   3'- gCGGGUGGCcGU------GGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 58807 0.67 0.292155
Target:  5'- uGCCUcgGCgGGCucgcGCUGCuCGGCACCcucGCCg -3'
miRNA:   3'- gCGGG--UGgCCG----UGGCG-GUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 58700 0.67 0.292155
Target:  5'- gGCUCgucGCCGcCGCCGUCAcCAUCGCCg -3'
miRNA:   3'- gCGGG---UGGCcGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 57126 0.68 0.247838
Target:  5'- uCGCCCAUCGGCgggACCGagCAGUAgUgGCCc -3'
miRNA:   3'- -GCGGGUGGCCG---UGGCg-GUCGU-GgCGG- -5'
23256 3' -64.7 NC_005259.1 + 56765 0.77 0.054321
Target:  5'- gGCCCAUCGGgGaCCGCUuGaCACCGCCg -3'
miRNA:   3'- gCGGGUGGCCgU-GGCGGuC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56417 0.68 0.247838
Target:  5'- gGCCCGCCGaGCucaaGCagagcaGCgAGCGCCggGCCa -3'
miRNA:   3'- gCGGGUGGC-CG----UGg-----CGgUCGUGG--CGG- -5'
23256 3' -64.7 NC_005259.1 + 56283 0.68 0.259288
Target:  5'- gGCCCguAUCGGCACCagcagaccacgugGCCGGacccucguCGCCGUCg -3'
miRNA:   3'- gCGGG--UGGCCGUGG-------------CGGUC--------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56240 0.67 0.278892
Target:  5'- cCGCCgACCacguugggaucGGCgGCCuUgAGCGCCGCCg -3'
miRNA:   3'- -GCGGgUGG-----------CCG-UGGcGgUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56114 0.7 0.171569
Target:  5'- uGgCCACCGaaACUGUguGCGCUGCCg -3'
miRNA:   3'- gCgGGUGGCcgUGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 55900 0.67 0.272442
Target:  5'- gGUCgCGCCGGggUCGCUGGCcagACCGCUg -3'
miRNA:   3'- gCGG-GUGGCCguGGCGGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 55693 0.66 0.319425
Target:  5'- -cCCCGUCGGCagccucguugaugGCCGCgAGCACCucGCCc -3'
miRNA:   3'- gcGGGUGGCCG-------------UGGCGgUCGUGG--CGG- -5'
23256 3' -64.7 NC_005259.1 + 55514 0.7 0.194334
Target:  5'- gGCCCACa-GCgaACUGUgcccaCAGCGCCGCCu -3'
miRNA:   3'- gCGGGUGgcCG--UGGCG-----GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53857 0.66 0.327453
Target:  5'- uGCCCGCCGacCACaGCUcaAGCGCuaCGCCg -3'
miRNA:   3'- gCGGGUGGCc-GUGgCGG--UCGUG--GCGG- -5'
23256 3' -64.7 NC_005259.1 + 53750 0.67 0.278892
Target:  5'- uGUCCACuCGGUGCCGCCgaacaGGaaauaGCCGUa -3'
miRNA:   3'- gCGGGUG-GCCGUGGCGG-----UCg----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 53460 0.66 0.312966
Target:  5'- aCGgCgGCUGGCucgUCGuCCGGC-CCGCCg -3'
miRNA:   3'- -GCgGgUGGCCGu--GGC-GGUCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53357 0.73 0.116967
Target:  5'- gCGCCCGCCucgacGGCuaaACCGagaCAGCaaACCGCCc -3'
miRNA:   3'- -GCGGGUGG-----CCG---UGGCg--GUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53244 0.76 0.069844
Target:  5'- uCGCgCCGCCGaCACCgucgccgccgcugucGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGG---------------CGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 52562 0.69 0.206175
Target:  5'- aGCCCgacauggucgaccggACCGGCcugagcgucGCCGagcaCCAGCGCCGUa -3'
miRNA:   3'- gCGGG---------------UGGCCG---------UGGC----GGUCGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.