Results 21 - 40 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23256 | 3' | -64.7 | NC_005259.1 | + | 61997 | 0.66 | 0.320148 |
Target: 5'- uGCaCCAUgGGCACCGUgCGGUguacCCGCUc -3' miRNA: 3'- gCG-GGUGgCCGUGGCG-GUCGu---GGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 35184 | 0.66 | 0.334133 |
Target: 5'- gGCgUGCCGGUgagcagcaccguGCCGCCugaGGCggcgaggaacgugACCGCCa -3' miRNA: 3'- gCGgGUGGCCG------------UGGCGG---UCG-------------UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 10133 | 0.66 | 0.312254 |
Target: 5'- aGCCCACgCGcGCGcCCGCCGuucgcacGCACUGaCg -3' miRNA: 3'- gCGGGUG-GC-CGU-GGCGGU-------CGUGGCgG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 49445 | 0.66 | 0.342431 |
Target: 5'- cCGCCUuggUCGGCAgCCGgaugcCCAGCAggUCGCCc -3' miRNA: 3'- -GCGGGu--GGCCGU-GGC-----GGUCGU--GGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 16741 | 0.66 | 0.319425 |
Target: 5'- aCGCUCAagaucgcCCGGCugCGUgAGaCACCGgaCCa -3' miRNA: 3'- -GCGGGU-------GGCCGugGCGgUC-GUGGC--GG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 38942 | 0.66 | 0.334881 |
Target: 5'- uGUgC-CCGGUGCCGCU---GCCGCCg -3' miRNA: 3'- gCGgGuGGCCGUGGCGGucgUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 10722 | 0.66 | 0.312254 |
Target: 5'- gGCCCGCaugauguCGGUgaucACCGC--GCGCUGCCg -3' miRNA: 3'- gCGGGUG-------GCCG----UGGCGguCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 23758 | 0.66 | 0.312966 |
Target: 5'- aCGCCCcgcagACCGGC-CC-CaCAGCcCCGCa -3' miRNA: 3'- -GCGGG-----UGGCCGuGGcG-GUCGuGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45664 | 0.66 | 0.342431 |
Target: 5'- --aCCGCCGu--CCGCgUAGUACCGCCu -3' miRNA: 3'- gcgGGUGGCcguGGCG-GUCGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 35614 | 0.66 | 0.320148 |
Target: 5'- gGCCaCGCUGcGUcgaguaguucggGCCGCCGcCGCUGCCg -3' miRNA: 3'- gCGG-GUGGC-CG------------UGGCGGUcGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 23473 | 0.66 | 0.342431 |
Target: 5'- gGCCU--CGGCAUUGUCGGUGCCgacGCCa -3' miRNA: 3'- gCGGGugGCCGUGGCGGUCGUGG---CGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 22848 | 0.66 | 0.320148 |
Target: 5'- gGCCCACCcGCAgCCGCaaccuGUACuCGCa -3' miRNA: 3'- gCGGGUGGcCGU-GGCGgu---CGUG-GCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 17314 | 0.67 | 0.305207 |
Target: 5'- aCGCCgAgCGGUACCccgaggguguGCCGGUcaacgucGCCGUCg -3' miRNA: 3'- -GCGGgUgGCCGUGG----------CGGUCG-------UGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 48596 | 0.67 | 0.278241 |
Target: 5'- aGCUugucgagCGCgGGCgcuACCGCCGugcGCACUGCCu -3' miRNA: 3'- gCGG-------GUGgCCG---UGGCGGU---CGUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 18441 | 0.67 | 0.305906 |
Target: 5'- aCGCCucgugcaaCACCGcGCacACCGCCGGUccugaGCCGUg -3' miRNA: 3'- -GCGG--------GUGGC-CG--UGGCGGUCG-----UGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 27751 | 0.67 | 0.278892 |
Target: 5'- uGCCCACgGuGCAUCGCCcucGGCGaCGaCCu -3' miRNA: 3'- gCGGGUGgC-CGUGGCGG---UCGUgGC-GG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 45008 | 0.67 | 0.305906 |
Target: 5'- nCGaCCGCCGGgGCCGC----GCCGCCc -3' miRNA: 3'- -GCgGGUGGCCgUGGCGgucgUGGCGG- -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 19557 | 0.67 | 0.305906 |
Target: 5'- uGCCCGCa---GCCGUcgggaCAGCGCCGCa -3' miRNA: 3'- gCGGGUGgccgUGGCG-----GUCGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 61854 | 0.67 | 0.305906 |
Target: 5'- aGCaCC-UCGGcCACCGCCucgcGUGCCGCg -3' miRNA: 3'- gCG-GGuGGCC-GUGGCGGu---CGUGGCGg -5' |
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23256 | 3' | -64.7 | NC_005259.1 | + | 17761 | 0.67 | 0.305906 |
Target: 5'- aGgCCGCCGcGCGCCggGCCGagcGCACCGa- -3' miRNA: 3'- gCgGGUGGC-CGUGG--CGGU---CGUGGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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