miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 34222 0.76 0.062108
Target:  5'- uGUCC-CCGGCGCUGCCGGUcuuGCCGUUg -3'
miRNA:   3'- gCGGGuGGCCGUGGCGGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 3114 0.76 0.06379
Target:  5'- gGCCauuGCgCGGCACCGUgggcagcggaCGGCACCGCCc -3'
miRNA:   3'- gCGGg--UG-GCCGUGGCG----------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45770 0.76 0.067287
Target:  5'- aCGCCCucGCCGGg--UGCCAGCACCGCg -3'
miRNA:   3'- -GCGGG--UGGCCgugGCGGUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 46939 0.76 0.067287
Target:  5'- uGCCCGCC-GCGCCGCCgaccgcguugAGCuuguuggccacGCCGCCg -3'
miRNA:   3'- gCGGGUGGcCGUGGCGG----------UCG-----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 52135 0.76 0.067287
Target:  5'- cCGCCguCCGGCACCucGCCgaggcaGGCAgCGCCg -3'
miRNA:   3'- -GCGGguGGCCGUGG--CGG------UCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44976 0.76 0.069104
Target:  5'- uGCCgaggGCCGGUgcgACUGCCgaGGCACCGCCg -3'
miRNA:   3'- gCGGg---UGGCCG---UGGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16567 0.76 0.069104
Target:  5'- cCGCCCACCgGGCAgaUCGCCgaGGaCAUCGCCc -3'
miRNA:   3'- -GCGGGUGG-CCGU--GGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 1357 0.76 0.069104
Target:  5'- uGCCUACUGGgcCGCuCGCC-GCGCCGCCc -3'
miRNA:   3'- gCGGGUGGCC--GUG-GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53244 0.76 0.069844
Target:  5'- uCGCgCCGCCGaCACCgucgccgccgcugucGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGG---------------CGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26806 0.75 0.076856
Target:  5'- nCGCCCgguugGCCGGUACCGgCGGUGgUGCCg -3'
miRNA:   3'- -GCGGG-----UGGCCGUGGCgGUCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51359 0.75 0.076856
Target:  5'- uGCCCGgUGGCACCGgCA-CACCGCg -3'
miRNA:   3'- gCGGGUgGCCGUGGCgGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 26046 0.75 0.076856
Target:  5'- aGCgCCGCCGGguUgGCCAuGcCGCCGCCg -3'
miRNA:   3'- gCG-GGUGGCCguGgCGGU-C-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 13411 0.75 0.076856
Target:  5'- gGCCUuccugGCCGGgguCGCCGCCGGgGCCGCg -3'
miRNA:   3'- gCGGG-----UGGCC---GUGGCGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 28635 0.75 0.076856
Target:  5'- aGgCCACCGGUgccgacACCGCCGagGCCGCCg -3'
miRNA:   3'- gCgGGUGGCCG------UGGCGGUcgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44235 0.74 0.085437
Target:  5'- uCGCCCGCC-GCGCCGCCcGCG-CGCg -3'
miRNA:   3'- -GCGGGUGGcCGUGGCGGuCGUgGCGg -5'
23256 3' -64.7 NC_005259.1 + 39405 0.74 0.087721
Target:  5'- gGUCCACCccgaGGCGgUGCCGGaCACCGUCa -3'
miRNA:   3'- gCGGGUGG----CCGUgGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36634 0.74 0.087721
Target:  5'- cCGCCCGCaaGGC-CCGCgauCAGCgaGCCGCCg -3'
miRNA:   3'- -GCGGGUGg-CCGuGGCG---GUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 18546 0.74 0.090063
Target:  5'- aGCCCGCCGacgaacCAUCGCCGuaCGCCGCCg -3'
miRNA:   3'- gCGGGUGGCc-----GUGGCGGUc-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 21988 0.74 0.098476
Target:  5'- -cCCCACCGGCACCGgcaagucgacggucaUCGgucGCACUGCCg -3'
miRNA:   3'- gcGGGUGGCCGUGGC---------------GGU---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12122 0.74 0.101089
Target:  5'- gGCCuucucccacagCACCGGgucugcuuucuugauCACCGCCgacGGCACCGCCc -3'
miRNA:   3'- gCGG-----------GUGGCC---------------GUGGCGG---UCGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.