miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 35456 1.09 0.000174
Target:  5'- gCGCCCACCGGCACCGCCAGCACCGCCc -3'
miRNA:   3'- -GCGGGUGGCCGUGGCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 19645 0.89 0.006461
Target:  5'- aCGCUCACCGGCACCGCCucgGGCAgCCGCUa -3'
miRNA:   3'- -GCGGGUGGCCGUGGCGG---UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46904 0.88 0.007833
Target:  5'- gCGCCCGCCGaGCAguCCGCguGCGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC-CGU--GGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37651 0.87 0.009495
Target:  5'- cCGCaCCGCCGcCGCCGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGGCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37377 0.87 0.010311
Target:  5'- aCGCCC-UCGGCACCGCCcgccGCGCCGCCc -3'
miRNA:   3'- -GCGGGuGGCCGUGGCGGu---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45624 0.83 0.019906
Target:  5'- uGCCCGCCGGgccgggcaGCgCGCCGGUGCCGCCg -3'
miRNA:   3'- gCGGGUGGCCg-------UG-GCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 19870 0.82 0.022205
Target:  5'- gCGCCCGCCGGgAUCGCCGaCGCCGCg -3'
miRNA:   3'- -GCGGGUGGCCgUGGCGGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 9799 0.81 0.027617
Target:  5'- uGCCCGCuCGcGCcacuACCGCCcGCACCGCCg -3'
miRNA:   3'- gCGGGUG-GC-CG----UGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16439 0.8 0.032512
Target:  5'- gGCCCaaACCgGGCACCGUCGGCAucgguaccCCGCCg -3'
miRNA:   3'- gCGGG--UGG-CCGUGGCGGUCGU--------GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36856 0.8 0.032512
Target:  5'- cCGCCCGCU-GCGCCGUUgcuGGCACCGCCc -3'
miRNA:   3'- -GCGGGUGGcCGUGGCGG---UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 63153 0.8 0.034325
Target:  5'- uCGCCCACguUGaGCAgCCGCCgcAGCGCCGCCg -3'
miRNA:   3'- -GCGGGUG--GC-CGU-GGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37201 0.79 0.037234
Target:  5'- gGCCCuuGCCGcCACCGCCGcCGCCGCCg -3'
miRNA:   3'- gCGGG--UGGCcGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 64673 0.79 0.037234
Target:  5'- -cCCaCACCaGCACCGCC-GCGCCGCCg -3'
miRNA:   3'- gcGG-GUGGcCGUGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43303 0.79 0.039306
Target:  5'- gCGCCCGCCugaauGGCugCGUUGGcCACCGCCu -3'
miRNA:   3'- -GCGGGUGG-----CCGugGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8560 0.79 0.041491
Target:  5'- aGCCCAU--GCGCCG-CAGCACCGCCa -3'
miRNA:   3'- gCGGGUGgcCGUGGCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 39316 0.78 0.042627
Target:  5'- aCGCCCGCUGucGCGCCGCUGGUgACCGUCa -3'
miRNA:   3'- -GCGGGUGGC--CGUGGCGGUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26412 0.78 0.050112
Target:  5'- gGCgCGgCGGUGCCGCCGuagaacGCACCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGU------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56765 0.77 0.054321
Target:  5'- gGCCCAUCGGgGaCCGCUuGaCACCGCCg -3'
miRNA:   3'- gCGGGUGGCCgU-GGCGGuC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26777 0.77 0.055798
Target:  5'- --gCCGCCGGUGCCucggaacaCCAGCGCCGCCg -3'
miRNA:   3'- gcgGGUGGCCGUGGc-------GGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35507 0.77 0.058871
Target:  5'- gGCCCcguuGCCGcCGCCGCCGGgcaCACCGCCc -3'
miRNA:   3'- gCGGG----UGGCcGUGGCGGUC---GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.