miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 157 0.67 0.29897
Target:  5'- gGCUCGcCCGGCGggGuCCGGCACCaCCg -3'
miRNA:   3'- gCGGGU-GGCCGUggC-GGUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 724 0.69 0.204159
Target:  5'- uCGCgagaaucaCACCGGCGgUGCCuaCGCCGCCg -3'
miRNA:   3'- -GCGg-------GUGGCCGUgGCGGucGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 768 0.68 0.23624
Target:  5'- gCGUCCACC-GCGCCGa-GGCgGCUGCCc -3'
miRNA:   3'- -GCGGGUGGcCGUGGCggUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 1357 0.76 0.069104
Target:  5'- uGCCUACUGGgcCGCuCGCC-GCGCCGCCc -3'
miRNA:   3'- gCGGGUGGCC--GUG-GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 1519 0.66 0.320148
Target:  5'- aCGCUgucacugacgauCACCGGCAUCaUCGGgGCCGCg -3'
miRNA:   3'- -GCGG------------GUGGCCGUGGcGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 1690 0.67 0.272442
Target:  5'- gCGCCCGCaaGCGCgaaCUcaAGCGCCGCCu -3'
miRNA:   3'- -GCGGGUGgcCGUGgc-GG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 1837 0.71 0.14334
Target:  5'- uGCUCGCCGcUGCCGCCgaGGCcgagaaaGCCGCCg -3'
miRNA:   3'- gCGGGUGGCcGUGGCGG--UCG-------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 2022 0.69 0.2197
Target:  5'- gGCgCACCGGCACC-UCAGUGCgGUg -3'
miRNA:   3'- gCGgGUGGCCGUGGcGGUCGUGgCGg -5'
23256 3' -64.7 NC_005259.1 + 2142 0.73 0.102688
Target:  5'- aGaCCCGCaCGGUGCUgGCCAGCggcgucgaGCCGCCg -3'
miRNA:   3'- gC-GGGUG-GCCGUGG-CGGUCG--------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 2224 0.66 0.341671
Target:  5'- gCGCCCGgccucgccauuugUCGGCGacaGCCGGUACgGCg -3'
miRNA:   3'- -GCGGGU-------------GGCCGUgg-CGGUCGUGgCGg -5'
23256 3' -64.7 NC_005259.1 + 3114 0.76 0.06379
Target:  5'- gGCCauuGCgCGGCACCGUgggcagcggaCGGCACCGCCc -3'
miRNA:   3'- gCGGg--UG-GCCGUGGCG----------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 3291 0.7 0.175923
Target:  5'- cCGCCuCGCCGGUcccuCgGCgAGCGCUGCg -3'
miRNA:   3'- -GCGG-GUGGCCGu---GgCGgUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 4502 0.68 0.241981
Target:  5'- uCGCCaccgCGCCgggaguGGCGCUGCgCGGCACC-CCg -3'
miRNA:   3'- -GCGG----GUGG------CCGUGGCG-GUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 4658 0.68 0.247838
Target:  5'- gCGCCUACgGGCACggUGUCuGCACUGgCu -3'
miRNA:   3'- -GCGGGUGgCCGUG--GCGGuCGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 5440 0.68 0.250213
Target:  5'- gCGCCCGCUGcCGCCGacagaucgcaugagCAGCACCaaugGCCg -3'
miRNA:   3'- -GCGGGUGGCcGUGGCg-------------GUCGUGG----CGG- -5'
23256 3' -64.7 NC_005259.1 + 5682 0.7 0.189579
Target:  5'- uCGCCCcgcacuGCCuGCugUGCUcGUGCCGCCa -3'
miRNA:   3'- -GCGGG------UGGcCGugGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6090 0.66 0.342431
Target:  5'- aCGCCCucaacGCCGaG-AUCGCCgaGGCcgagGCCGCCg -3'
miRNA:   3'- -GCGGG-----UGGC-CgUGGCGG--UCG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6423 0.71 0.163149
Target:  5'- gGCCCGaccucgccgaugUCGGCACCGUcgcgcugaucggCAGCGUCGCCg -3'
miRNA:   3'- gCGGGU------------GGCCGUGGCG------------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6896 0.72 0.129701
Target:  5'- uCGCCCGCaacgcacGCGCCGCC-GCcaucgagaACCGCCg -3'
miRNA:   3'- -GCGGGUGgc-----CGUGGCGGuCG--------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 7244 0.66 0.312966
Target:  5'- aGCCgCGCCGGUgucgagugcGCCaagaaacuGCuCGGCuACCGCCc -3'
miRNA:   3'- gCGG-GUGGCCG---------UGG--------CG-GUCG-UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.