miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 67974 0.66 0.327453
Target:  5'- gCGCgCAgCGGCGUgGCCAcCGCCGCg -3'
miRNA:   3'- -GCGgGUgGCCGUGgCGGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 67764 0.7 0.188173
Target:  5'- cCGgCCACCGGcCACCGaccaCgcggugaccuuguuGGCACCGCg -3'
miRNA:   3'- -GCgGGUGGCC-GUGGCg---G--------------UCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 67120 0.69 0.2197
Target:  5'- uGCCCGCUGcGguCgugCGUgAGCACCGCUg -3'
miRNA:   3'- gCGGGUGGC-CguG---GCGgUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66848 0.69 0.2197
Target:  5'- cCGCCCGCaCGGgcCACCgaucgGCCuuguucGCACCGCg -3'
miRNA:   3'- -GCGGGUG-GCC--GUGG-----CGGu-----CGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 66752 0.72 0.126403
Target:  5'- uGCUgcCCGGC-CUGCCAGUcgACCGCCu -3'
miRNA:   3'- gCGGguGGCCGuGGCGGUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66631 0.68 0.230614
Target:  5'- uCGUCC-CUGGcCACCGCuCGGauuGCUGCCg -3'
miRNA:   3'- -GCGGGuGGCC-GUGGCG-GUCg--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66263 0.66 0.312966
Target:  5'- gGCCCgcGCCgGGCgGCgGCUcaCGCCGCCa -3'
miRNA:   3'- gCGGG--UGG-CCG-UGgCGGucGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66177 0.7 0.194334
Target:  5'- uGCUCAUCGGCACCgcuGCCGGUGCaGUa -3'
miRNA:   3'- gCGGGUGGCCGUGG---CGGUCGUGgCGg -5'
23256 3' -64.7 NC_005259.1 + 64751 0.69 0.197725
Target:  5'- cCGCCCACCGcgccucgcgacgguGCGCC-UCGGCGgcCCGCUg -3'
miRNA:   3'- -GCGGGUGGC--------------CGUGGcGGUCGU--GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 64673 0.79 0.037234
Target:  5'- -cCCaCACCaGCACCGCC-GCGCCGCCg -3'
miRNA:   3'- gcGG-GUGGcCGUGGCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 64131 0.67 0.285463
Target:  5'- cCGCCUgACCGaGCGgcCCGUCGGCGauGCCc -3'
miRNA:   3'- -GCGGG-UGGC-CGU--GGCGGUCGUggCGG- -5'
23256 3' -64.7 NC_005259.1 + 63666 0.69 0.2197
Target:  5'- aCGCCggacaccucgggCACCGGCG-CGCCGGggauCugCGCCu -3'
miRNA:   3'- -GCGG------------GUGGCCGUgGCGGUC----GugGCGG- -5'
23256 3' -64.7 NC_005259.1 + 63153 0.8 0.034325
Target:  5'- uCGCCCACguUGaGCAgCCGCCgcAGCGCCGCCg -3'
miRNA:   3'- -GCGGGUG--GC-CGU-GGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 62925 0.68 0.23454
Target:  5'- uCGUCC-UCGGUuugcggcucgcgcuGCUGCCgGGCACCGCUg -3'
miRNA:   3'- -GCGGGuGGCCG--------------UGGCGG-UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 62614 0.73 0.108191
Target:  5'- aGCUgaCGCC-GCACCgugGCCAGCACCGCa -3'
miRNA:   3'- gCGG--GUGGcCGUGG---CGGUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 61997 0.66 0.320148
Target:  5'- uGCaCCAUgGGCACCGUgCGGUguacCCGCUc -3'
miRNA:   3'- gCG-GGUGgCCGUGGCG-GUCGu---GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 61854 0.67 0.305906
Target:  5'- aGCaCC-UCGGcCACCGCCucgcGUGCCGCg -3'
miRNA:   3'- gCG-GGuGGCC-GUGGCGGu---CGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 61671 0.68 0.23624
Target:  5'- uGCCCAUCGGCggcaaaaugugaAUCGCgGGUcuuACCGUCc -3'
miRNA:   3'- gCGGGUGGCCG------------UGGCGgUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 61623 0.67 0.292155
Target:  5'- aGCagACCGGCACCGCCGacggugaacuCACCGgUCa -3'
miRNA:   3'- gCGggUGGCCGUGGCGGUc---------GUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 60269 0.71 0.163149
Target:  5'- uGgCCACCaGCGCUGCCGG-GCgGCCa -3'
miRNA:   3'- gCgGGUGGcCGUGGCGGUCgUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.