miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 67974 0.66 0.327453
Target:  5'- gCGCgCAgCGGCGUgGCCAcCGCCGCg -3'
miRNA:   3'- -GCGgGUgGCCGUGgCGGUcGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 13335 0.66 0.327453
Target:  5'- -aCCCACggCGGgACCGCCc-CGCCGCa -3'
miRNA:   3'- gcGGGUG--GCCgUGGCGGucGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 7244 0.66 0.312966
Target:  5'- aGCCgCGCCGGUgucgagugcGCCaagaaacuGCuCGGCuACCGCCc -3'
miRNA:   3'- gCGG-GUGGCCG---------UGG--------CG-GUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53857 0.66 0.327453
Target:  5'- uGCCCGCCGacCACaGCUcaAGCGCuaCGCCg -3'
miRNA:   3'- gCGGGUGGCc-GUGgCGG--UCGUG--GCGG- -5'
23256 3' -64.7 NC_005259.1 + 33259 0.66 0.350104
Target:  5'- uGCCCGCa-GCGCCGau-GCugCGCa -3'
miRNA:   3'- gCGGGUGgcCGUGGCgguCGugGCGg -5'
23256 3' -64.7 NC_005259.1 + 28924 0.66 0.326717
Target:  5'- cCGCCUcagccagaagcaGgCGGCACgauccugCGCC-GCAUCGCCg -3'
miRNA:   3'- -GCGGG------------UgGCCGUG-------GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 50534 0.66 0.327453
Target:  5'- gCGCUCGCCucgGGCgaggaaACCGCaCGGCagaauGCUGCCc -3'
miRNA:   3'- -GCGGGUGG---CCG------UGGCG-GUCG-----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53460 0.66 0.312966
Target:  5'- aCGgCgGCUGGCucgUCGuCCGGC-CCGCCg -3'
miRNA:   3'- -GCgGgUGGCCGu--GGC-GGUCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 10133 0.66 0.312254
Target:  5'- aGCCCACgCGcGCGcCCGCCGuucgcacGCACUGaCg -3'
miRNA:   3'- gCGGGUG-GC-CGU-GGCGGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 66263 0.66 0.312966
Target:  5'- gGCCCgcGCCgGGCgGCgGCUcaCGCCGCCa -3'
miRNA:   3'- gCGGG--UGG-CCG-UGgCGGucGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35184 0.66 0.334133
Target:  5'- gGCgUGCCGGUgagcagcaccguGCCGCCugaGGCggcgaggaacgugACCGCCa -3'
miRNA:   3'- gCGgGUGGCCG------------UGGCGG---UCG-------------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16741 0.66 0.319425
Target:  5'- aCGCUCAagaucgcCCGGCugCGUgAGaCACCGgaCCa -3'
miRNA:   3'- -GCGGGU-------GGCCGugGCGgUC-GUGGC--GG- -5'
23256 3' -64.7 NC_005259.1 + 24550 0.66 0.320148
Target:  5'- aGUCCAgaUCGGCGggguguacUCGUgGGCACCGCa -3'
miRNA:   3'- gCGGGU--GGCCGU--------GGCGgUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 61997 0.66 0.320148
Target:  5'- uGCaCCAUgGGCACCGUgCGGUguacCCGCUc -3'
miRNA:   3'- gCG-GGUGgCCGUGGCG-GUCGu---GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 55693 0.66 0.319425
Target:  5'- -cCCCGUCGGCagccucguugaugGCCGCgAGCACCucGCCc -3'
miRNA:   3'- gcGGGUGGCCG-------------UGGCGgUCGUGG--CGG- -5'
23256 3' -64.7 NC_005259.1 + 35614 0.66 0.320148
Target:  5'- gGCCaCGCUGcGUcgaguaguucggGCCGCCGcCGCUGCCg -3'
miRNA:   3'- gCGG-GUGGC-CG------------UGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 10722 0.66 0.312254
Target:  5'- gGCCCGCaugauguCGGUgaucACCGC--GCGCUGCCg -3'
miRNA:   3'- gCGGGUG-------GCCG----UGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23758 0.66 0.312966
Target:  5'- aCGCCCcgcagACCGGC-CC-CaCAGCcCCGCa -3'
miRNA:   3'- -GCGGG-----UGGCCGuGGcG-GUCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 38942 0.66 0.334881
Target:  5'- uGUgC-CCGGUGCCGCU---GCCGCCg -3'
miRNA:   3'- gCGgGuGGCCGUGGCGGucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22848 0.66 0.320148
Target:  5'- gGCCCACCcGCAgCCGCaaccuGUACuCGCa -3'
miRNA:   3'- gCGGGUGGcCGU-GGCGgu---CGUG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.