miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 2142 0.73 0.102688
Target:  5'- aGaCCCGCaCGGUGCUgGCCAGCggcgucgaGCCGCCg -3'
miRNA:   3'- gC-GGGUG-GCCGUGG-CGGUCG--------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44416 0.73 0.102688
Target:  5'- cCGCCUgACCGGCAgCGCCGaUACCgGCCc -3'
miRNA:   3'- -GCGGG-UGGCCGUgGCGGUcGUGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 45321 0.73 0.10791
Target:  5'- gGCcgCCGCCGaacugcguggccuGCGCCGCCuGgGCCGCCg -3'
miRNA:   3'- gCG--GGUGGC-------------CGUGGCGGuCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 62614 0.73 0.108191
Target:  5'- aGCUgaCGCC-GCACCgugGCCAGCACCGCa -3'
miRNA:   3'- gCGG--GUGGcCGUGG---CGGUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 25913 0.73 0.108191
Target:  5'- cCGCCUgaGCCGcCGCCGCCgguccggugAGCGCaCGCCg -3'
miRNA:   3'- -GCGGG--UGGCcGUGGCGG---------UCGUG-GCGG- -5'
23256 3' -64.7 NC_005259.1 + 36969 0.73 0.108191
Target:  5'- cCGCCUcgGCCcGCACCGCCGaacgucGCACCGUUc -3'
miRNA:   3'- -GCGGG--UGGcCGUGGCGGU------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26118 0.73 0.111046
Target:  5'- cCGCcgCCGCCGGuCGCCGguCCGaCGCCGCCg -3'
miRNA:   3'- -GCG--GGUGGCC-GUGGC--GGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22656 0.73 0.11397
Target:  5'- cCGCCCACCa-CAUCGCCGacGCacugACCGCCg -3'
miRNA:   3'- -GCGGGUGGccGUGGCGGU--CG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 42216 0.73 0.11397
Target:  5'- uGCCCGCC-GCGCCGCCGuCcCCgGCCa -3'
miRNA:   3'- gCGGGUGGcCGUGGCGGUcGuGG-CGG- -5'
23256 3' -64.7 NC_005259.1 + 53357 0.73 0.116967
Target:  5'- gCGCCCGCCucgacGGCuaaACCGagaCAGCaaACCGCCc -3'
miRNA:   3'- -GCGGGUGG-----CCG---UGGCg--GUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46745 0.73 0.116967
Target:  5'- uGCCCGCgaUGGCugCGCCGaCACCugcGCCg -3'
miRNA:   3'- gCGGGUG--GCCGugGCGGUcGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 12982 0.72 0.119108
Target:  5'- gCGCCCACCGuggugcucgcguucGCACUcgGCUA-CGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC--------------CGUGG--CGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12546 0.72 0.120037
Target:  5'- aGCCC-CaCGGCAUUGCCgggguGGC-CCGCCa -3'
miRNA:   3'- gCGGGuG-GCCGUGGCGG-----UCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 12225 0.72 0.120037
Target:  5'- cCGCCCGCUGGCcgggcaAUgGUCA-CACCGCCu -3'
miRNA:   3'- -GCGGGUGGCCG------UGgCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 51473 0.72 0.122864
Target:  5'- uGCCC-UCGGCgacccacACCGCCGGggauaggucgaCGCCGCCg -3'
miRNA:   3'- gCGGGuGGCCG-------UGGCGGUC-----------GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66752 0.72 0.126403
Target:  5'- uGCUgcCCGGC-CUGCCAGUcgACCGCCu -3'
miRNA:   3'- gCGGguGGCCGuGGCGGUCG--UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8040 0.72 0.126403
Target:  5'- uCGCgaaCuguCCGaCACCGCCGGuCGCCGCCg -3'
miRNA:   3'- -GCGg--Gu--GGCcGUGGCGGUC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 36700 0.72 0.129368
Target:  5'- uCGCCCGCCGaugagcucgugccGCucgacCCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCGGGUGGC-------------CGu----GGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45732 0.72 0.129701
Target:  5'- gCGCaCCACCGagGCCGC--GCACCGCCu -3'
miRNA:   3'- -GCG-GGUGGCcgUGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 6896 0.72 0.129701
Target:  5'- uCGCCCGCaacgcacGCGCCGCC-GCcaucgagaACCGCCg -3'
miRNA:   3'- -GCGGGUGgc-----CGUGGCGGuCG--------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.