miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 45505 0.67 0.29897
Target:  5'- gGUCgCugUGGcCACCgcGCCGGUguugGCCGCCg -3'
miRNA:   3'- gCGG-GugGCC-GUGG--CGGUCG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 58807 0.67 0.292155
Target:  5'- uGCCUcgGCgGGCucgcGCUGCuCGGCACCcucGCCg -3'
miRNA:   3'- gCGGG--UGgCCG----UGGCG-GUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 61623 0.67 0.292155
Target:  5'- aGCagACCGGCACCGCCGacggugaacuCACCGgUCa -3'
miRNA:   3'- gCGggUGGCCGUGGCGGUc---------GUGGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 41419 0.67 0.292155
Target:  5'- uGCCCACgaugugcaCGG-GCCGCCAuuuGCGCC-CCg -3'
miRNA:   3'- gCGGGUG--------GCCgUGGCGGU---CGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 14861 0.67 0.292155
Target:  5'- uGCUCGCgaGGUucgcGCUGCCcgAGcCGCCGCCg -3'
miRNA:   3'- gCGGGUGg-CCG----UGGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 58700 0.67 0.292155
Target:  5'- gGCUCgucGCCGcCGCCGUCAcCAUCGCCg -3'
miRNA:   3'- gCGGG---UGGCcGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 60132 0.67 0.292155
Target:  5'- gGCCUcguCCuGCGCgGCCuuGGcCGCCGCCu -3'
miRNA:   3'- gCGGGu--GGcCGUGgCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23213 0.67 0.292155
Target:  5'- gGCCCaaggACgGGUACCGUCcGCucgaCGCCa -3'
miRNA:   3'- gCGGG----UGgCCGUGGCGGuCGug--GCGG- -5'
23256 3' -64.7 NC_005259.1 + 43850 0.67 0.290135
Target:  5'- uCGCCaUGCCGaGCgcacccgugacgacACCGgCAGCguuGCCGCCg -3'
miRNA:   3'- -GCGG-GUGGC-CG--------------UGGCgGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 13111 0.67 0.285463
Target:  5'- gGCCCGCuCGGCGgcuaCGaCCAGCGCaCGgUg -3'
miRNA:   3'- gCGGGUG-GCCGUg---GC-GGUCGUG-GCgG- -5'
23256 3' -64.7 NC_005259.1 + 25959 0.67 0.285463
Target:  5'- gGCCCGCCGaCGCCuGCgAugagaccggGCAgCGCCg -3'
miRNA:   3'- gCGGGUGGCcGUGG-CGgU---------CGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 64131 0.67 0.285463
Target:  5'- cCGCCUgACCGaGCGgcCCGUCGGCGauGCCc -3'
miRNA:   3'- -GCGGG-UGGC-CGU--GGCGGUCGUggCGG- -5'
23256 3' -64.7 NC_005259.1 + 7419 0.67 0.285463
Target:  5'- uCGUcgCCGUCGGCGgUGCCcGCGCCGCa -3'
miRNA:   3'- -GCG--GGUGGCCGUgGCGGuCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 37057 0.67 0.2848
Target:  5'- cCGCCCACggCGGCGgUGuCCAcguccacGCACCGgCg -3'
miRNA:   3'- -GCGGGUG--GCCGUgGC-GGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 56240 0.67 0.278892
Target:  5'- cCGCCgACCacguugggaucGGCgGCCuUgAGCGCCGCCg -3'
miRNA:   3'- -GCGGgUGG-----------CCG-UGGcGgUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35268 0.67 0.278892
Target:  5'- gCGCCCGCCG----CGCCGGggUCGCCg -3'
miRNA:   3'- -GCGGGUGGCcgugGCGGUCguGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23889 0.67 0.278892
Target:  5'- cCGCugCCGCCcgaGCCGCCGcGC-CCGCCg -3'
miRNA:   3'- -GCG--GGUGGccgUGGCGGU-CGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 32326 0.67 0.278892
Target:  5'- uGCCCGCCaauuguGCGCgGCCAucaacGCgagguugaugACCGCCg -3'
miRNA:   3'- gCGGGUGGc-----CGUGgCGGU-----CG----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53750 0.67 0.278892
Target:  5'- uGUCCACuCGGUGCCGCCgaacaGGaaauaGCCGUa -3'
miRNA:   3'- gCGGGUG-GCCGUGGCGG-----UCg----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 27751 0.67 0.278892
Target:  5'- uGCCCACgGuGCAUCGCCcucGGCGaCGaCCu -3'
miRNA:   3'- gCGGGUGgC-CGUGGCGG---UCGUgGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.