miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 45505 0.67 0.29897
Target:  5'- gGUCgCugUGGcCACCgcGCCGGUguugGCCGCCg -3'
miRNA:   3'- gCGG-GugGCC-GUGG--CGGUCG----UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 41419 0.67 0.292155
Target:  5'- uGCCCACgaugugcaCGG-GCCGCCAuuuGCGCC-CCg -3'
miRNA:   3'- gCGGGUG--------GCCgUGGCGGU---CGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 157 0.67 0.29897
Target:  5'- gGCUCGcCCGGCGggGuCCGGCACCaCCg -3'
miRNA:   3'- gCGGGU-GGCCGUggC-GGUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 9534 0.67 0.29897
Target:  5'- cCGCCggguCACCGGagaGCUGcCCGGCcucgACCGCg -3'
miRNA:   3'- -GCGG----GUGGCCg--UGGC-GGUCG----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 58700 0.67 0.292155
Target:  5'- gGCUCgucGCCGcCGCCGUCAcCAUCGCCg -3'
miRNA:   3'- gCGGG---UGGCcGUGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 25959 0.67 0.285463
Target:  5'- gGCCCGCCGaCGCCuGCgAugagaccggGCAgCGCCg -3'
miRNA:   3'- gCGGGUGGCcGUGG-CGgU---------CGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 27751 0.67 0.278892
Target:  5'- uGCCCACgGuGCAUCGCCcucGGCGaCGaCCu -3'
miRNA:   3'- gCGGGUGgC-CGUGGCGG---UCGUgGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 1690 0.67 0.272442
Target:  5'- gCGCCCGCaaGCGCgaaCUcaAGCGCCGCCu -3'
miRNA:   3'- -GCGGGUGgcCGUGgc-GG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46055 0.67 0.272442
Target:  5'- aGCCgA-UGGCcuugaGCUGCUcaAGCACCGCCg -3'
miRNA:   3'- gCGGgUgGCCG-----UGGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 55900 0.67 0.272442
Target:  5'- gGUCgCGCCGGggUCGCUGGCcagACCGCUg -3'
miRNA:   3'- gCGG-GUGGCCguGGCGGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45008 0.67 0.305906
Target:  5'- nCGaCCGCCGGgGCCGC----GCCGCCc -3'
miRNA:   3'- -GCgGGUGGCCgUGGCGgucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 19557 0.67 0.305906
Target:  5'- uGCCCGCa---GCCGUcgggaCAGCGCCGCa -3'
miRNA:   3'- gCGGGUGgccgUGGCG-----GUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 20125 0.67 0.275008
Target:  5'- gGCCgCACUGGCuGCCgucgcgaugacggcaGCCGGUGCCcugGCCa -3'
miRNA:   3'- gCGG-GUGGCCG-UGG---------------CGGUCGUGG---CGG- -5'
23256 3' -64.7 NC_005259.1 + 61854 0.67 0.305906
Target:  5'- aGCaCC-UCGGcCACCGCCucgcGUGCCGCg -3'
miRNA:   3'- gCG-GGuGGCC-GUGGCGGu---CGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 18441 0.67 0.305906
Target:  5'- aCGCCucgugcaaCACCGcGCacACCGCCGGUccugaGCCGUg -3'
miRNA:   3'- -GCGG--------GUGGC-CG--UGGCGGUCG-----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 35268 0.67 0.278892
Target:  5'- gCGCCCGCCG----CGCCGGggUCGCCg -3'
miRNA:   3'- -GCGGGUGGCcgugGCGGUCguGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 43850 0.67 0.290135
Target:  5'- uCGCCaUGCCGaGCgcacccgugacgacACCGgCAGCguuGCCGCCg -3'
miRNA:   3'- -GCGG-GUGGC-CG--------------UGGCgGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37057 0.67 0.2848
Target:  5'- cCGCCCACggCGGCGgUGuCCAcguccacGCACCGgCg -3'
miRNA:   3'- -GCGGGUG--GCCGUgGC-GGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 14861 0.67 0.292155
Target:  5'- uGCUCGCgaGGUucgcGCUGCCcgAGcCGCCGCCg -3'
miRNA:   3'- gCGGGUGg-CCG----UGGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 60132 0.67 0.292155
Target:  5'- gGCCUcguCCuGCGCgGCCuuGGcCGCCGCCu -3'
miRNA:   3'- gCGGGu--GGcCGUGgCGG--UC-GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.