miRNA display CGI


Results 41 - 60 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 45624 0.83 0.019906
Target:  5'- uGCCCGCCGGgccgggcaGCgCGCCGGUGCCGCCg -3'
miRNA:   3'- gCGGGUGGCCg-------UG-GCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37377 0.87 0.010311
Target:  5'- aCGCCC-UCGGCACCGCCcgccGCGCCGCCc -3'
miRNA:   3'- -GCGGGuGGCCGUGGCGGu---CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 37651 0.87 0.009495
Target:  5'- cCGCaCCGCCGcCGCCGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGGCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46904 0.88 0.007833
Target:  5'- gCGCCCGCCGaGCAguCCGCguGCGCCGCCg -3'
miRNA:   3'- -GCGGGUGGC-CGU--GGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 19645 0.89 0.006461
Target:  5'- aCGCUCACCGGCACCGCCucgGGCAgCCGCUa -3'
miRNA:   3'- -GCGGGUGGCCGUGGCGG---UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 8560 0.79 0.041491
Target:  5'- aGCCCAU--GCGCCG-CAGCACCGCCa -3'
miRNA:   3'- gCGGGUGgcCGUGGCgGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 39316 0.78 0.042627
Target:  5'- aCGCCCGCUGucGCGCCGCUGGUgACCGUCa -3'
miRNA:   3'- -GCGGGUGGC--CGUGGCGGUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 53244 0.76 0.069844
Target:  5'- uCGCgCCGCCGaCACCgucgccgccgcugucGCCGGUGCCGCCa -3'
miRNA:   3'- -GCG-GGUGGCcGUGG---------------CGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 44976 0.76 0.069104
Target:  5'- uGCCgaggGCCGGUgcgACUGCCgaGGCACCGCCg -3'
miRNA:   3'- gCGGg---UGGCCG---UGGCGG--UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 16567 0.76 0.069104
Target:  5'- cCGCCCACCgGGCAgaUCGCCgaGGaCAUCGCCc -3'
miRNA:   3'- -GCGGGUGG-CCGU--GGCGG--UC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 1357 0.76 0.069104
Target:  5'- uGCCUACUGGgcCGCuCGCC-GCGCCGCCc -3'
miRNA:   3'- gCGGGUGGCC--GUG-GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 52135 0.76 0.067287
Target:  5'- cCGCCguCCGGCACCucGCCgaggcaGGCAgCGCCg -3'
miRNA:   3'- -GCGGguGGCCGUGG--CGG------UCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 46939 0.76 0.067287
Target:  5'- uGCCCGCC-GCGCCGCCgaccgcguugAGCuuguuggccacGCCGCCg -3'
miRNA:   3'- gCGGGUGGcCGUGGCGG----------UCG-----------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 45770 0.76 0.067287
Target:  5'- aCGCCCucGCCGGg--UGCCAGCACCGCg -3'
miRNA:   3'- -GCGGG--UGGCCgugGCGGUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 3114 0.76 0.06379
Target:  5'- gGCCauuGCgCGGCACCGUgggcagcggaCGGCACCGCCc -3'
miRNA:   3'- gCGGg--UG-GCCGUGGCG----------GUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 34222 0.76 0.062108
Target:  5'- uGUCC-CCGGCGCUGCCGGUcuuGCCGUUg -3'
miRNA:   3'- gCGGGuGGCCGUGGCGGUCG---UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 35507 0.77 0.058871
Target:  5'- gGCCCcguuGCCGcCGCCGCCGGgcaCACCGCCc -3'
miRNA:   3'- gCGGG----UGGCcGUGGCGGUC---GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26777 0.77 0.055798
Target:  5'- --gCCGCCGGUGCCucggaacaCCAGCGCCGCCg -3'
miRNA:   3'- gcgGGUGGCCGUGGc-------GGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 56765 0.77 0.054321
Target:  5'- gGCCCAUCGGgGaCCGCUuGaCACCGCCg -3'
miRNA:   3'- gCGGGUGGCCgU-GGCGGuC-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26412 0.78 0.050112
Target:  5'- gGCgCGgCGGUGCCGCCGuagaacGCACCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGU------CGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.