miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 35614 0.66 0.320148
Target:  5'- gGCCaCGCUGcGUcgaguaguucggGCCGCCGcCGCUGCCg -3'
miRNA:   3'- gCGG-GUGGC-CG------------UGGCGGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 22848 0.66 0.320148
Target:  5'- gGCCCACCcGCAgCCGCaaccuGUACuCGCa -3'
miRNA:   3'- gCGGGUGGcCGU-GGCGgu---CGUG-GCGg -5'
23256 3' -64.7 NC_005259.1 + 1519 0.66 0.320148
Target:  5'- aCGCUgucacugacgauCACCGGCAUCaUCGGgGCCGCg -3'
miRNA:   3'- -GCGG------------GUGGCCGUGGcGGUCgUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 24550 0.66 0.320148
Target:  5'- aGUCCAgaUCGGCGggguguacUCGUgGGCACCGCa -3'
miRNA:   3'- gCGGGU--GGCCGU--------GGCGgUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 16741 0.66 0.319425
Target:  5'- aCGCUCAagaucgcCCGGCugCGUgAGaCACCGgaCCa -3'
miRNA:   3'- -GCGGGU-------GGCCGugGCGgUC-GUGGC--GG- -5'
23256 3' -64.7 NC_005259.1 + 55693 0.66 0.319425
Target:  5'- -cCCCGUCGGCagccucguugaugGCCGCgAGCACCucGCCc -3'
miRNA:   3'- gcGGGUGGCCG-------------UGGCGgUCGUGG--CGG- -5'
23256 3' -64.7 NC_005259.1 + 53460 0.66 0.312966
Target:  5'- aCGgCgGCUGGCucgUCGuCCGGC-CCGCCg -3'
miRNA:   3'- -GCgGgUGGCCGu--GGC-GGUCGuGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 23758 0.66 0.312966
Target:  5'- aCGCCCcgcagACCGGC-CC-CaCAGCcCCGCa -3'
miRNA:   3'- -GCGGG-----UGGCCGuGGcG-GUCGuGGCGg -5'
23256 3' -64.7 NC_005259.1 + 7244 0.66 0.312966
Target:  5'- aGCCgCGCCGGUgucgagugcGCCaagaaacuGCuCGGCuACCGCCc -3'
miRNA:   3'- gCGG-GUGGCCG---------UGG--------CG-GUCG-UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 66263 0.66 0.312966
Target:  5'- gGCCCgcGCCgGGCgGCgGCUcaCGCCGCCa -3'
miRNA:   3'- gCGGG--UGG-CCG-UGgCGGucGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 10133 0.66 0.312254
Target:  5'- aGCCCACgCGcGCGcCCGCCGuucgcacGCACUGaCg -3'
miRNA:   3'- gCGGGUG-GC-CGU-GGCGGU-------CGUGGCgG- -5'
23256 3' -64.7 NC_005259.1 + 10722 0.66 0.312254
Target:  5'- gGCCCGCaugauguCGGUgaucACCGC--GCGCUGCCg -3'
miRNA:   3'- gCGGGUG-------GCCG----UGGCGguCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 61854 0.67 0.305906
Target:  5'- aGCaCC-UCGGcCACCGCCucgcGUGCCGCg -3'
miRNA:   3'- gCG-GGuGGCC-GUGGCGGu---CGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 18441 0.67 0.305906
Target:  5'- aCGCCucgugcaaCACCGcGCacACCGCCGGUccugaGCCGUg -3'
miRNA:   3'- -GCGG--------GUGGC-CG--UGGCGGUCG-----UGGCGg -5'
23256 3' -64.7 NC_005259.1 + 17761 0.67 0.305906
Target:  5'- aGgCCGCCGcGCGCCggGCCGagcGCACCGa- -3'
miRNA:   3'- gCgGGUGGC-CGUGG--CGGU---CGUGGCgg -5'
23256 3' -64.7 NC_005259.1 + 19557 0.67 0.305906
Target:  5'- uGCCCGCa---GCCGUcgggaCAGCGCCGCa -3'
miRNA:   3'- gCGGGUGgccgUGGCG-----GUCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 45008 0.67 0.305906
Target:  5'- nCGaCCGCCGGgGCCGC----GCCGCCc -3'
miRNA:   3'- -GCgGGUGGCCgUGGCGgucgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 17314 0.67 0.305207
Target:  5'- aCGCCgAgCGGUACCccgaggguguGCCGGUcaacgucGCCGUCg -3'
miRNA:   3'- -GCGGgUgGCCGUGG----------CGGUCG-------UGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 157 0.67 0.29897
Target:  5'- gGCUCGcCCGGCGggGuCCGGCACCaCCg -3'
miRNA:   3'- gCGGGU-GGCCGUggC-GGUCGUGGcGG- -5'
23256 3' -64.7 NC_005259.1 + 9534 0.67 0.29897
Target:  5'- cCGCCggguCACCGGagaGCUGcCCGGCcucgACCGCg -3'
miRNA:   3'- -GCGG----GUGGCCg--UGGC-GGUCG----UGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.