miRNA display CGI


Results 81 - 100 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23256 3' -64.7 NC_005259.1 + 25959 0.67 0.285463
Target:  5'- gGCCCGCCGaCGCCuGCgAugagaccggGCAgCGCCg -3'
miRNA:   3'- gCGGGUGGCcGUGG-CGgU---------CGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26046 0.75 0.076856
Target:  5'- aGCgCCGCCGGguUgGCCAuGcCGCCGCCg -3'
miRNA:   3'- gCG-GGUGGCCguGgCGGU-C-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26118 0.73 0.111046
Target:  5'- cCGCcgCCGCCGGuCGCCGguCCGaCGCCGCCg -3'
miRNA:   3'- -GCG--GGUGGCC-GUGGC--GGUcGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26412 0.78 0.050112
Target:  5'- gGCgCGgCGGUGCCGCCGuagaacGCACCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGU------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26777 0.77 0.055798
Target:  5'- --gCCGCCGGUGCCucggaacaCCAGCGCCGCCg -3'
miRNA:   3'- gcgGGUGGCCGUGGc-------GGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 26806 0.75 0.076856
Target:  5'- nCGCCCgguugGCCGGUACCGgCGGUGgUGCCg -3'
miRNA:   3'- -GCGGG-----UGGCCGUGGCgGUCGUgGCGG- -5'
23256 3' -64.7 NC_005259.1 + 27289 0.7 0.167312
Target:  5'- cCGCCgcugcacgCGCCGGaCACgGUCAGCAUCGUUg -3'
miRNA:   3'- -GCGG--------GUGGCC-GUGgCGGUCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 27751 0.67 0.278892
Target:  5'- uGCCCACgGuGCAUCGCCcucGGCGaCGaCCu -3'
miRNA:   3'- gCGGGUGgC-CGUGGCGG---UCGUgGC-GG- -5'
23256 3' -64.7 NC_005259.1 + 27946 0.68 0.241981
Target:  5'- aGCUCGCCGGUgaacggauCUGUCAGCGUgGCCa -3'
miRNA:   3'- gCGGGUGGCCGu-------GGCGGUCGUGgCGG- -5'
23256 3' -64.7 NC_005259.1 + 28267 0.68 0.266113
Target:  5'- uGCCCGaaaccgUCGGCuCUGCCgauguaggccacGGUGCCGCCc -3'
miRNA:   3'- gCGGGU------GGCCGuGGCGG------------UCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28571 0.7 0.180375
Target:  5'- -aCCC-CCGcCACCGCCucuGaCGCCGCCa -3'
miRNA:   3'- gcGGGuGGCcGUGGCGGu--C-GUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28635 0.75 0.076856
Target:  5'- aGgCCACCGGUgccgacACCGCCGagGCCGCCg -3'
miRNA:   3'- gCgGGUGGCCG------UGGCGGUcgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28751 0.71 0.156683
Target:  5'- gCGCCCgagcgugagaucgucGCCGGUGCCGacgaGGUAcCCGCCg -3'
miRNA:   3'- -GCGGG---------------UGGCCGUGGCgg--UCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 28924 0.66 0.326717
Target:  5'- cCGCCUcagccagaagcaGgCGGCACgauccugCGCC-GCAUCGCCg -3'
miRNA:   3'- -GCGGG------------UgGCCGUG-------GCGGuCGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 30152 0.68 0.253811
Target:  5'- aGCUCgACCGG-GCCGCCuacAG-GCCGCCa -3'
miRNA:   3'- gCGGG-UGGCCgUGGCGG---UCgUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 30184 0.71 0.155103
Target:  5'- cCGCCCGCaCaGCAcuaccCCGUCGGUGcCCGCCg -3'
miRNA:   3'- -GCGGGUG-GcCGU-----GGCGGUCGU-GGCGG- -5'
23256 3' -64.7 NC_005259.1 + 30765 0.71 0.151216
Target:  5'- uGCCgaCGCCgguGGCACCGCUGccguuguucgcGUACCGCCg -3'
miRNA:   3'- gCGG--GUGG---CCGUGGCGGU-----------CGUGGCGG- -5'
23256 3' -64.7 NC_005259.1 + 31246 0.68 0.241981
Target:  5'- gGCgCGgCGGUGCCGCCc-CACaCGCCg -3'
miRNA:   3'- gCGgGUgGCCGUGGCGGucGUG-GCGG- -5'
23256 3' -64.7 NC_005259.1 + 31550 0.72 0.136539
Target:  5'- uCGCCUugUagGGUGCCGCU-GCACCGCg -3'
miRNA:   3'- -GCGGGugG--CCGUGGCGGuCGUGGCGg -5'
23256 3' -64.7 NC_005259.1 + 31740 0.66 0.337134
Target:  5'- gCGCCUGCCGcGagcgcuggugucccCACCGCCccgucaucgauguGCugCGCCu -3'
miRNA:   3'- -GCGGGUGGC-C--------------GUGGCGGu------------CGugGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.