miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23258 5' -57.5 NC_005259.1 + 2138 0.67 0.663189
Target:  5'- aCGCaGACCCGCacggugcuGGCCAGCGG-CGuCGa -3'
miRNA:   3'- aGUG-CUGGGUG--------CUGGUCGCCaGU-GCc -5'
23258 5' -57.5 NC_005259.1 + 3962 0.7 0.45942
Target:  5'- -gGCGAUUCugGACCugAGCGGUCccGCGa -3'
miRNA:   3'- agUGCUGGGugCUGG--UCGCCAG--UGCc -5'
23258 5' -57.5 NC_005259.1 + 7949 0.66 0.725108
Target:  5'- gCGCG-CCCACGGCUgcuuGGUGGccCACGc -3'
miRNA:   3'- aGUGCuGGGUGCUGG----UCGCCa-GUGCc -5'
23258 5' -57.5 NC_005259.1 + 8581 0.68 0.569081
Target:  5'- cCACcGCCCACGcacgauCCGGCGGccugaguugcuUCAUGGu -3'
miRNA:   3'- aGUGcUGGGUGCu-----GGUCGCC-----------AGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 9042 0.66 0.725108
Target:  5'- aUCAUGugCgGggcgguaacCGGCuCGGUGGUCAUGGc -3'
miRNA:   3'- -AGUGCugGgU---------GCUG-GUCGCCAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 12222 0.67 0.631746
Target:  5'- gCACcGCCCGCuGGCCGGgcaaUGGUCACa- -3'
miRNA:   3'- aGUGcUGGGUG-CUGGUC----GCCAGUGcc -5'
23258 5' -57.5 NC_005259.1 + 13120 0.68 0.558758
Target:  5'- -gGCGG-CUACGACCAGCG--CACGGu -3'
miRNA:   3'- agUGCUgGGUGCUGGUCGCcaGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 15309 0.66 0.725108
Target:  5'- cUCGCcGCCCACGGucucgaCGGCGGUaCugGu -3'
miRNA:   3'- -AGUGcUGGGUGCUg-----GUCGCCA-GugCc -5'
23258 5' -57.5 NC_005259.1 + 16778 0.69 0.508065
Target:  5'- aUCACGACUCGuggguCGAC--GCGGUCGCGu -3'
miRNA:   3'- -AGUGCUGGGU-----GCUGguCGCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 16810 0.68 0.61077
Target:  5'- aUCGCG-CUCGgGGCCGG-GGUCAUGa -3'
miRNA:   3'- -AGUGCuGGGUgCUGGUCgCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 17051 0.68 0.579451
Target:  5'- cCGCGACCC-CGA--GGCGGUgCGCGc -3'
miRNA:   3'- aGUGCUGGGuGCUggUCGCCA-GUGCc -5'
23258 5' -57.5 NC_005259.1 + 20337 0.76 0.218784
Target:  5'- gCACGACCUAUGGCgGGCGGUacuaCGCGu -3'
miRNA:   3'- aGUGCUGGGUGCUGgUCGCCA----GUGCc -5'
23258 5' -57.5 NC_005259.1 + 27891 0.68 0.588818
Target:  5'- cCACGAUCCACcuggggucgccgaGACCGcGCGGgugguaGCGGu -3'
miRNA:   3'- aGUGCUGGGUG-------------CUGGU-CGCCag----UGCC- -5'
23258 5' -57.5 NC_005259.1 + 29945 0.74 0.279929
Target:  5'- aCGCGGCCCggucGCGGCUGGUGGg-GCGGg -3'
miRNA:   3'- aGUGCUGGG----UGCUGGUCGCCagUGCC- -5'
23258 5' -57.5 NC_005259.1 + 33299 0.68 0.599258
Target:  5'- cCACGGC-UGCGGCUcgaucccgccgucGGCGGUCACGcGg -3'
miRNA:   3'- aGUGCUGgGUGCUGG-------------UCGCCAGUGC-C- -5'
23258 5' -57.5 NC_005259.1 + 33671 0.66 0.682997
Target:  5'- gCcCGGCCCacccuguGCGACCaAGCG-UCAUGGa -3'
miRNA:   3'- aGuGCUGGG-------UGCUGG-UCGCcAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 34305 1.11 0.000733
Target:  5'- aUCACGACCCACGACCAGCGGUCACGGa -3'
miRNA:   3'- -AGUGCUGGGUGCUGGUCGCCAGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 36471 0.68 0.579451
Target:  5'- gCACcGCCCACcACCcgaucucGCGGUCgACGGg -3'
miRNA:   3'- aGUGcUGGGUGcUGGu------CGCCAG-UGCC- -5'
23258 5' -57.5 NC_005259.1 + 36638 0.68 0.558758
Target:  5'- cCGCaaGGCCCGCGAUCAGCGaGcCGCc- -3'
miRNA:   3'- aGUG--CUGGGUGCUGGUCGC-CaGUGcc -5'
23258 5' -57.5 NC_005259.1 + 37054 0.69 0.538277
Target:  5'- cCACcGCCCACGG-CGGCGGUgucCACGu -3'
miRNA:   3'- aGUGcUGGGUGCUgGUCGCCA---GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.