miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23258 5' -57.5 NC_005259.1 + 63452 0.66 0.725108
Target:  5'- aUCGaGGCCCAUGGCCAaccGCGuGaUCGCGu -3'
miRNA:   3'- -AGUgCUGGGUGCUGGU---CGC-C-AGUGCc -5'
23258 5' -57.5 NC_005259.1 + 16778 0.69 0.508065
Target:  5'- aUCACGACUCGuggguCGAC--GCGGUCGCGu -3'
miRNA:   3'- -AGUGCUGGGU-----GCUGguCGCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 66717 0.69 0.528133
Target:  5'- gCACGaugauGCCCGCcGCCAcGCGGUCA-GGc -3'
miRNA:   3'- aGUGC-----UGGGUGcUGGU-CGCCAGUgCC- -5'
23258 5' -57.5 NC_005259.1 + 37054 0.69 0.538277
Target:  5'- cCACcGCCCACGG-CGGCGGUgucCACGu -3'
miRNA:   3'- aGUGcUGGGUGCUgGUCGCCA---GUGCc -5'
23258 5' -57.5 NC_005259.1 + 13120 0.68 0.558758
Target:  5'- -gGCGG-CUACGACCAGCG--CACGGu -3'
miRNA:   3'- agUGCUgGGUGCUGGUCGCcaGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 36638 0.68 0.558758
Target:  5'- cCGCaaGGCCCGCGAUCAGCGaGcCGCc- -3'
miRNA:   3'- aGUG--CUGGGUGCUGGUCGC-CaGUGcc -5'
23258 5' -57.5 NC_005259.1 + 8581 0.68 0.569081
Target:  5'- cCACcGCCCACGcacgauCCGGCGGccugaguugcuUCAUGGu -3'
miRNA:   3'- aGUGcUGGGUGCu-----GGUCGCC-----------AGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 47307 0.68 0.569081
Target:  5'- -aGCGACCCcuuggccUGACCGGCGGcCuuGGu -3'
miRNA:   3'- agUGCUGGGu------GCUGGUCGCCaGugCC- -5'
23258 5' -57.5 NC_005259.1 + 17051 0.68 0.579451
Target:  5'- cCGCGACCC-CGA--GGCGGUgCGCGc -3'
miRNA:   3'- aGUGCUGGGuGCUggUCGCCA-GUGCc -5'
23258 5' -57.5 NC_005259.1 + 3962 0.7 0.45942
Target:  5'- -gGCGAUUCugGACCugAGCGGUCccGCGa -3'
miRNA:   3'- agUGCUGGGugCUGG--UCGCCAG--UGCc -5'
23258 5' -57.5 NC_005259.1 + 50336 0.7 0.440663
Target:  5'- gUCGCGGCCCuuGuCCu-CGGUCACGa -3'
miRNA:   3'- -AGUGCUGGGugCuGGucGCCAGUGCc -5'
23258 5' -57.5 NC_005259.1 + 55309 0.71 0.431449
Target:  5'- cCGCGugCgACGACCacaggGGUGGUCuugGCGGc -3'
miRNA:   3'- aGUGCugGgUGCUGG-----UCGCCAG---UGCC- -5'
23258 5' -57.5 NC_005259.1 + 41470 0.76 0.199731
Target:  5'- -aGCGGCCCgugacgccgucgagcACGACCucGGCGGUgGCGGg -3'
miRNA:   3'- agUGCUGGG---------------UGCUGG--UCGCCAgUGCC- -5'
23258 5' -57.5 NC_005259.1 + 20337 0.76 0.218784
Target:  5'- gCACGACCUAUGGCgGGCGGUacuaCGCGu -3'
miRNA:   3'- aGUGCUGGGUGCUGgUCGCCA----GUGCc -5'
23258 5' -57.5 NC_005259.1 + 66259 0.75 0.253973
Target:  5'- gCGCGGCCCGCG-CCgggcGGCGGcUCACGc -3'
miRNA:   3'- aGUGCUGGGUGCuGG----UCGCC-AGUGCc -5'
23258 5' -57.5 NC_005259.1 + 29945 0.74 0.279929
Target:  5'- aCGCGGCCCggucGCGGCUGGUGGg-GCGGg -3'
miRNA:   3'- aGUGCUGGG----UGCUGGUCGCCagUGCC- -5'
23258 5' -57.5 NC_005259.1 + 48027 0.74 0.279929
Target:  5'- cCGCG-CCCACGAuguugaccaccCCGGUGGcCACGGc -3'
miRNA:   3'- aGUGCuGGGUGCU-----------GGUCGCCaGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 53514 0.73 0.30075
Target:  5'- -aACGugCuCGUGGCCAGCGG-CACGGg -3'
miRNA:   3'- agUGCugG-GUGCUGGUCGCCaGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 60143 0.73 0.338066
Target:  5'- gCGCGGCCUugGccGCCgccucAGCGGccUCACGGg -3'
miRNA:   3'- aGUGCUGGGugC--UGG-----UCGCC--AGUGCC- -5'
23258 5' -57.5 NC_005259.1 + 51250 0.72 0.378636
Target:  5'- gUCACG-CCguuGCGGCUcgcGGUGGUCACGGu -3'
miRNA:   3'- -AGUGCuGGg--UGCUGG---UCGCCAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.