miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 20963 0.69 0.38012
Target:  5'- cUACACGCGGu-AUCGCCgGgGUGACa -3'
miRNA:   3'- cGUGUGCGCCcuUGGUGGgCgCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 22333 0.67 0.50924
Target:  5'- cGCACuguuCGCaGGAuuuACCGCCacgaugCGuCGCGACg -3'
miRNA:   3'- -CGUGu---GCGcCCU---UGGUGG------GC-GCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 23950 0.66 0.549527
Target:  5'- uGCGCACcccgagaCGGGccgauuGACCucguACCCGCGCGcCa -3'
miRNA:   3'- -CGUGUGc------GCCC------UUGG----UGGGCGCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 25942 0.75 0.149972
Target:  5'- aGCGCACGCcGGuGCCcgGCCCGC-CGACg -3'
miRNA:   3'- -CGUGUGCGcCCuUGG--UGGGCGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 26476 0.66 0.537325
Target:  5'- aGCACACGUaguugucGcGGAacgccgcgagcucGCCGCCCG-GCGAg -3'
miRNA:   3'- -CGUGUGCG-------C-CCU-------------UGGUGGGCgCGCUg -5'
23260 5' -59.9 NC_005259.1 + 32876 0.72 0.254885
Target:  5'- cGCGCGCGgugaucgauucacCGGGGgcgagggugaGCCACCCggcccgcucggGCGCGGCg -3'
miRNA:   3'- -CGUGUGC-------------GCCCU----------UGGUGGG-----------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 33122 0.77 0.106236
Target:  5'- gGC-CACGCGGcAGCCGCCgCGCGUGAUc -3'
miRNA:   3'- -CGuGUGCGCCcUUGGUGG-GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 33884 1.11 0.000351
Target:  5'- aGCACACGCGGGAACCACCCGCGCGACg -3'
miRNA:   3'- -CGUGUGCGCCCUUGGUGGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 34684 0.69 0.363528
Target:  5'- cGCAUugGCGcugcGGAugaugccgaccAUCugCCGCGCGAg -3'
miRNA:   3'- -CGUGugCGC----CCU-----------UGGugGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 36036 0.68 0.451327
Target:  5'- aCAUGaucaGCGa-GGCCACCCGCGCGAg -3'
miRNA:   3'- cGUGUg---CGCccUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 36506 0.75 0.153942
Target:  5'- aGCuCugGCGuguccuuGAACCACCCGCGCGGu -3'
miRNA:   3'- -CGuGugCGCc------CUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 36541 0.67 0.50924
Target:  5'- -gACACGCGGGGugAUCugCgGUGUGGg -3'
miRNA:   3'- cgUGUGCGCCCU--UGGugGgCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 36604 0.66 0.570046
Target:  5'- cGUACguaaACGCGacccuuGCCGCCCGCGCcGCc -3'
miRNA:   3'- -CGUG----UGCGCccu---UGGUGGGCGCGcUG- -5'
23260 5' -59.9 NC_005259.1 + 36864 0.74 0.189272
Target:  5'- uGCGCcguUGCuGGcACCGCCCGCGcCGACg -3'
miRNA:   3'- -CGUGu--GCGcCCuUGGUGGGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 37372 0.67 0.460736
Target:  5'- aGCuCACGCccucGGcACCGCCCGcCGCGcCg -3'
miRNA:   3'- -CGuGUGCGc---CCuUGGUGGGC-GCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 39005 0.66 0.533279
Target:  5'- cGUugAgCGCGGuGACCAgacccgagauccguuCCUGCGCGAUc -3'
miRNA:   3'- -CGugU-GCGCCcUUGGU---------------GGGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 41656 0.7 0.324288
Target:  5'- gGCGCucggugaGCGGGAucugcACCGCgUGCGUGGCc -3'
miRNA:   3'- -CGUGug-----CGCCCU-----UGGUGgGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 43679 0.66 0.519203
Target:  5'- uCACACcgccgccgGUGGcGAACCucuugaaaCCGCGCGACc -3'
miRNA:   3'- cGUGUG--------CGCC-CUUGGug------GGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 45767 0.66 0.539353
Target:  5'- aGCACGCccucgcCGGGuGCCAgcaCCGCGuUGACg -3'
miRNA:   3'- -CGUGUGc-----GCCCuUGGUg--GGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 45869 0.68 0.451327
Target:  5'- gGCAUGC-CGGGGaacagGCCACCCGCuGUGu- -3'
miRNA:   3'- -CGUGUGcGCCCU-----UGGUGGGCG-CGCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.