miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23260 5' -59.9 NC_005259.1 + 2949 0.73 0.214823
Target:  5'- -gGCGCGCGaGAcccugGCCACCgCGCGCGAa -3'
miRNA:   3'- cgUGUGCGCcCU-----UGGUGG-GCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 3125 0.73 0.209486
Target:  5'- gGCAC-CGUGGGcAgcggacggcACCGCCCGUGgGACu -3'
miRNA:   3'- -CGUGuGCGCCC-U---------UGGUGGGCGCgCUG- -5'
23260 5' -59.9 NC_005259.1 + 4426 0.76 0.128049
Target:  5'- cCGCGCGCccgaGGucGAGCCGCCCGUGCGAg -3'
miRNA:   3'- cGUGUGCG----CC--CUUGGUGGGCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 4508 0.7 0.339597
Target:  5'- cCGCGC-CGGGAGugGCgCUGCGCGGCa -3'
miRNA:   3'- cGUGUGcGCCCUUggUG-GGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 5652 0.7 0.339597
Target:  5'- aGgACG-GCGGGcGCUACaCGCGCGACa -3'
miRNA:   3'- -CgUGUgCGCCCuUGGUGgGCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6204 0.69 0.371761
Target:  5'- aGCGugaGCGgGGuGAGCCGCCgCGC-CGACa -3'
miRNA:   3'- -CGUg--UGCgCC-CUUGGUGG-GCGcGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6486 0.69 0.361897
Target:  5'- cGCuCACGCGGGuacugcuGGCCcacaucgaccgacGCCgugCGCGCGACa -3'
miRNA:   3'- -CGuGUGCGCCC-------UUGG-------------UGG---GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 6630 0.71 0.281478
Target:  5'- uGC-CA-GCGGGu-CCGCCCGUGaCGACa -3'
miRNA:   3'- -CGuGUgCGCCCuuGGUGGGCGC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 6673 0.67 0.508248
Target:  5'- ---gACGCGcGAGCUGCCCgcuuccaagagugGCGCGACa -3'
miRNA:   3'- cgugUGCGCcCUUGGUGGG-------------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 9860 0.7 0.33035
Target:  5'- cCAgACGCGGGAACgcgacgauguuguCGCUuuccucgCGCGCGACg -3'
miRNA:   3'- cGUgUGCGCCCUUG-------------GUGG-------GCGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 13337 0.66 0.519203
Target:  5'- cCACG-GCGGG-ACCGCCC-CGCcGCa -3'
miRNA:   3'- cGUGUgCGCCCuUGGUGGGcGCGcUG- -5'
23260 5' -59.9 NC_005259.1 + 14205 0.69 0.355423
Target:  5'- aGCAgGC-CGGGAucaACUACCCGgCGCG-Cg -3'
miRNA:   3'- -CGUgUGcGCCCU---UGGUGGGC-GCGCuG- -5'
23260 5' -59.9 NC_005259.1 + 15547 0.67 0.486641
Target:  5'- uCACugGCcGGugccacccucagguGGCCACCCucggggccaGCGCGACg -3'
miRNA:   3'- cGUGugCGcCC--------------UUGGUGGG---------CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 16092 0.66 0.539353
Target:  5'- aCACcauCGUGGaGAugUACCgGCGCGGa -3'
miRNA:   3'- cGUGu--GCGCC-CUugGUGGgCGCGCUg -5'
23260 5' -59.9 NC_005259.1 + 16400 0.66 0.559761
Target:  5'- cCAUACGgGGGAcgcaGCCcaccgagguGCCCGUcgaGCGGCc -3'
miRNA:   3'- cGUGUGCgCCCU----UGG---------UGGGCG---CGCUG- -5'
23260 5' -59.9 NC_005259.1 + 18459 0.67 0.489562
Target:  5'- cGCACAcCGcCGGuccuGAGCCguGCCCGaCGcCGACg -3'
miRNA:   3'- -CGUGU-GC-GCC----CUUGG--UGGGC-GC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 18873 0.7 0.324288
Target:  5'- uGCGCGCGUGGGAgGCCaACCaCGaUGuCGACc -3'
miRNA:   3'- -CGUGUGCGCCCU-UGG-UGG-GC-GC-GCUG- -5'
23260 5' -59.9 NC_005259.1 + 19514 0.66 0.558735
Target:  5'- cCACGCGCGcGGAaauccucACCGCC-GUGCaGGCc -3'
miRNA:   3'- cGUGUGCGC-CCU-------UGGUGGgCGCG-CUG- -5'
23260 5' -59.9 NC_005259.1 + 19869 0.66 0.529243
Target:  5'- cGCGCcCGcCGGGAucGCCgacgccgcGCCCaagauGUGCGACa -3'
miRNA:   3'- -CGUGuGC-GCCCU--UGG--------UGGG-----CGCGCUG- -5'
23260 5' -59.9 NC_005259.1 + 20336 0.69 0.400687
Target:  5'- uGCACGaccuaugGCGGGcgguacuacgcguCCACCuCGUGCGACg -3'
miRNA:   3'- -CGUGUg------CGCCCuu-----------GGUGG-GCGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.