miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23261 5' -53.2 NC_005259.1 + 50853 0.66 0.857923
Target:  5'- gGGGCCACGcGAGGcagaUUGCaAUCGAUg -3'
miRNA:   3'- aCUUGGUGCaCUCC----AGCGgUAGCUAg -5'
23261 5' -53.2 NC_005259.1 + 27216 0.66 0.849527
Target:  5'- cGAGCUcgGUGAGcGggccgaaaUCGCCAUCGAUUu -3'
miRNA:   3'- aCUUGGugCACUC-C--------AGCGGUAGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 33593 0.67 0.832063
Target:  5'- cGGGCCACc-GAGG-CGCgGUCGAg- -3'
miRNA:   3'- aCUUGGUGcaCUCCaGCGgUAGCUag -5'
23261 5' -53.2 NC_005259.1 + 54071 0.67 0.823012
Target:  5'- uUGucCUGCGUGAGGUCGguggCGUCGcgCa -3'
miRNA:   3'- -ACuuGGUGCACUCCAGCg---GUAGCuaG- -5'
23261 5' -53.2 NC_005259.1 + 8917 0.67 0.823012
Target:  5'- cGGGCCGCGUucuGGGcUCGuUUGUCGAUCa -3'
miRNA:   3'- aCUUGGUGCAc--UCC-AGC-GGUAGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 48644 0.67 0.823012
Target:  5'- cGGGCUGCcaGAucGUCGCCAUUGAUCu -3'
miRNA:   3'- aCUUGGUGcaCUc-CAGCGGUAGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 28648 0.67 0.813761
Target:  5'- cGAcACCGCc-GAGGcCGCCGUCaaGAUCa -3'
miRNA:   3'- aCU-UGGUGcaCUCCaGCGGUAG--CUAG- -5'
23261 5' -53.2 NC_005259.1 + 2734 0.67 0.80432
Target:  5'- --cACCACcgaugccGAGGUCGCCGUCGu-- -3'
miRNA:   3'- acuUGGUGca-----CUCCAGCGGUAGCuag -5'
23261 5' -53.2 NC_005259.1 + 64414 0.68 0.794699
Target:  5'- cGAugCAgcCGUGAGGgaUCGCCGaCGAg- -3'
miRNA:   3'- aCUugGU--GCACUCC--AGCGGUaGCUag -5'
23261 5' -53.2 NC_005259.1 + 27894 0.68 0.794699
Target:  5'- cGAuCCACcUGGGGUCGCCGagacCGcgCg -3'
miRNA:   3'- aCUuGGUGcACUCCAGCGGUa---GCuaG- -5'
23261 5' -53.2 NC_005259.1 + 57965 0.69 0.733812
Target:  5'- ---cCCAUGgucGAGGUCGCCGg-GAUCg -3'
miRNA:   3'- acuuGGUGCa--CUCCAGCGGUagCUAG- -5'
23261 5' -53.2 NC_005259.1 + 8685 0.69 0.701842
Target:  5'- gGGGCCGCcucgaugucgcuGUcGAGGUCGUCG-CGGUCa -3'
miRNA:   3'- aCUUGGUG------------CA-CUCCAGCGGUaGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 9564 0.71 0.625384
Target:  5'- -cGACCGCGUcggcGAGGUgcucgucaaCGUCGUCGGUCu -3'
miRNA:   3'- acUUGGUGCA----CUCCA---------GCGGUAGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 66426 0.71 0.603441
Target:  5'- cGAaccGCCACGUGAugacGGUCucgaaaguGCCGUCGAacUCg -3'
miRNA:   3'- aCU---UGGUGCACU----CCAG--------CGGUAGCU--AG- -5'
23261 5' -53.2 NC_005259.1 + 5900 0.71 0.581594
Target:  5'- -cGACCACGUcGAGGUCGaggugcugcgcaCCGUCGAc- -3'
miRNA:   3'- acUUGGUGCA-CUCCAGC------------GGUAGCUag -5'
23261 5' -53.2 NC_005259.1 + 40033 0.71 0.57073
Target:  5'- gUGAugCuu-UGAGGUCGCCggUGAUCg -3'
miRNA:   3'- -ACUugGugcACUCCAGCGGuaGCUAG- -5'
23261 5' -53.2 NC_005259.1 + 56302 0.72 0.549158
Target:  5'- -aGACCACGUGGccggacccucGUCGCCGUCGAg- -3'
miRNA:   3'- acUUGGUGCACUc---------CAGCGGUAGCUag -5'
23261 5' -53.2 NC_005259.1 + 40361 0.74 0.446212
Target:  5'- aUGAACCGCGccgagggcaUGAGGUCuuCCAUCGAc- -3'
miRNA:   3'- -ACUUGGUGC---------ACUCCAGc-GGUAGCUag -5'
23261 5' -53.2 NC_005259.1 + 39927 0.76 0.322294
Target:  5'- aGGGCCGCGUcGAGGUCGUCcUUGGUg -3'
miRNA:   3'- aCUUGGUGCA-CUCCAGCGGuAGCUAg -5'
23261 5' -53.2 NC_005259.1 + 33791 1.11 0.001645
Target:  5'- uUGAACCACGUGAGGUCGCCAUCGAUCa -3'
miRNA:   3'- -ACUUGGUGCACUCCAGCGGUAGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.