Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 58658 | 0.66 | 0.402443 |
Target: 5'- cGGUaGCCCGGUgCACCgggGUGCaGCUu -3' miRNA: 3'- cCCA-CGGGCCGgGUGGga-CACGcUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 20350 | 0.66 | 0.419753 |
Target: 5'- cGGGcgGUacuaCGcGUCCACCUcGUGCGACg -3' miRNA: 3'- -CCCa-CGg---GC-CGGGUGGGaCACGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 24813 | 0.66 | 0.411041 |
Target: 5'- aGGUGcCCCGGCaCGCCgUGcccgcacCGACCa -3' miRNA: 3'- cCCAC-GGGCCGgGUGGgACac-----GCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 52250 | 0.66 | 0.419753 |
Target: 5'- ---cGCCCGGCCC-CUCUcaggGgGGCCg -3' miRNA: 3'- cccaCGGGCCGGGuGGGAca--CgCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 41415 | 0.66 | 0.419753 |
Target: 5'- gGGGUGCCCacgaugugcacGGgCCGCCauuUGCGcCCc -3' miRNA: 3'- -CCCACGGG-----------CCgGGUGGgacACGCuGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 7310 | 0.66 | 0.411041 |
Target: 5'- uGGGUGCCCGaGUUCACCgCcGU-CG-CCg -3' miRNA: 3'- -CCCACGGGC-CGGGUGG-GaCAcGCuGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 64771 | 0.66 | 0.402443 |
Target: 5'- cGGUGCgCCucggcGGCCCGCUgcgacuggCUGUGUG-CCu -3' miRNA: 3'- cCCACG-GG-----CCGGGUGG--------GACACGCuGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 8286 | 0.66 | 0.386424 |
Target: 5'- cGGGUGCgCgGGCacccgcacggaaacgCCGCCUUGUcggagcugccgacgGCGAUCa -3' miRNA: 3'- -CCCACG-GgCCG---------------GGUGGGACA--------------CGCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 36954 | 0.66 | 0.385592 |
Target: 5'- gGGGUGCCCGcGagaCCGCCU----CGGCCc -3' miRNA: 3'- -CCCACGGGC-Cg--GGUGGGacacGCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 38328 | 0.66 | 0.383933 |
Target: 5'- uGGUGCCCGaguugcgcgaguaGacccugaccucguCCCACCCgagccGUGCGACg -3' miRNA: 3'- cCCACGGGC-------------C-------------GGGUGGGa----CACGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 45464 | 0.66 | 0.428575 |
Target: 5'- gGGGUGCCgaaCGGgCCgagcuucugGCCgCUG-GUGGCCu -3' miRNA: 3'- -CCCACGG---GCCgGG---------UGG-GACaCGCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 61795 | 0.67 | 0.377344 |
Target: 5'- cGGcgGCCUGauaGCCCugUagCUGUGCGAUCu -3' miRNA: 3'- cCCa-CGGGC---CGGGugG--GACACGCUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 63549 | 0.67 | 0.369215 |
Target: 5'- aGGUGCUCGGCggCCACCgac-GCGACg -3' miRNA: 3'- cCCACGGGCCG--GGUGGgacaCGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 30820 | 0.67 | 0.35332 |
Target: 5'- cGGGUaGUCCGGCgCGCCgaGgucgGCaACCu -3' miRNA: 3'- -CCCA-CGGGCCGgGUGGgaCa---CGcUGG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 22377 | 0.67 | 0.345556 |
Target: 5'- aGGGcaaaaGCCCGGUCgGCCUcG-GCGACg -3' miRNA: 3'- -CCCa----CGGGCCGGgUGGGaCaCGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 2225 | 0.67 | 0.337916 |
Target: 5'- ---cGCCCGGCCuCGCCauuUGUcgGCGACa -3' miRNA: 3'- cccaCGGGCCGG-GUGGg--ACA--CGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 23638 | 0.67 | 0.330399 |
Target: 5'- cGGUGUgguuUCGGCCCGCCgacgGCGACg -3' miRNA: 3'- cCCACG----GGCCGGGUGGgacaCGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 63865 | 0.68 | 0.2879 |
Target: 5'- aGGUGgCCGGCUgGCCUUGcGUGGgCg -3' miRNA: 3'- cCCACgGGCCGGgUGGGACaCGCUgG- -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 48063 | 0.68 | 0.323005 |
Target: 5'- cGGGUaGCgCC-GCCgCGCCCUGaGCGAUg -3' miRNA: 3'- -CCCA-CG-GGcCGG-GUGGGACaCGCUGg -5' |
|||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 61437 | 0.68 | 0.301571 |
Target: 5'- cGGGcGCgCCGGUcgaucUCAUCCUGcUGCGAUCc -3' miRNA: 3'- -CCCaCG-GGCCG-----GGUGGGAC-ACGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home