miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23262 3' -63.1 NC_005259.1 + 37045 0.7 0.243893
Target:  5'- uGGUGCCCGccaCCGCCCacgGCGGCg -3'
miRNA:   3'- cCCACGGGCcg-GGUGGGacaCGCUGg -5'
23262 3' -63.1 NC_005259.1 + 38328 0.66 0.383933
Target:  5'- uGGUGCCCGaguugcgcgaguaGacccugaccucguCCCACCCgagccGUGCGACg -3'
miRNA:   3'- cCCACGGGC-------------C-------------GGGUGGGa----CACGCUGg -5'
23262 3' -63.1 NC_005259.1 + 41415 0.66 0.419753
Target:  5'- gGGGUGCCCacgaugugcacGGgCCGCCauuUGCGcCCc -3'
miRNA:   3'- -CCCACGGG-----------CCgGGUGGgacACGCuGG- -5'
23262 3' -63.1 NC_005259.1 + 42474 0.74 0.114468
Target:  5'- cGGcgagGCCCGGCCCguagagccgugACCCguccggcgGUGUGGCCa -3'
miRNA:   3'- cCCa---CGGGCCGGG-----------UGGGa-------CACGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 44508 0.7 0.226812
Target:  5'- gGGGUGCCCuGgCCACCCac-GCcGCCg -3'
miRNA:   3'- -CCCACGGGcCgGGUGGGacaCGcUGG- -5'
23262 3' -63.1 NC_005259.1 + 45464 0.66 0.428575
Target:  5'- gGGGUGCCgaaCGGgCCgagcuucugGCCgCUG-GUGGCCu -3'
miRNA:   3'- -CCCACGG---GCCgGG---------UGG-GACaCGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 48063 0.68 0.323005
Target:  5'- cGGGUaGCgCC-GCCgCGCCCUGaGCGAUg -3'
miRNA:   3'- -CCCA-CG-GGcCGG-GUGGGACaCGCUGg -5'
23262 3' -63.1 NC_005259.1 + 52250 0.66 0.419753
Target:  5'- ---cGCCCGGCCC-CUCUcaggGgGGCCg -3'
miRNA:   3'- cccaCGGGCCGGGuGGGAca--CgCUGG- -5'
23262 3' -63.1 NC_005259.1 + 53542 0.73 0.140837
Target:  5'- cGGUGCCCGGUguCgGCUCgggcgGUGCGAUCc -3'
miRNA:   3'- cCCACGGGCCG--GgUGGGa----CACGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 56409 0.76 0.091792
Target:  5'- uGGUGCCCGGCCCGCCgaGcucaagcagagcaGCGAgCg -3'
miRNA:   3'- cCCACGGGCCGGGUGGgaCa------------CGCUgG- -5'
23262 3' -63.1 NC_005259.1 + 58658 0.66 0.402443
Target:  5'- cGGUaGCCCGGUgCACCgggGUGCaGCUu -3'
miRNA:   3'- cCCA-CGGGCCGgGUGGga-CACGcUGG- -5'
23262 3' -63.1 NC_005259.1 + 60257 0.7 0.221348
Target:  5'- cGGGUGCaaggCUGGCCaccaGCgCUGccggGCGGCCa -3'
miRNA:   3'- -CCCACG----GGCCGGg---UGgGACa---CGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 61437 0.68 0.301571
Target:  5'- cGGGcGCgCCGGUcgaucUCAUCCUGcUGCGAUCc -3'
miRNA:   3'- -CCCaCG-GGCCG-----GGUGGGAC-ACGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 61795 0.67 0.377344
Target:  5'- cGGcgGCCUGauaGCCCugUagCUGUGCGAUCu -3'
miRNA:   3'- cCCa-CGGGC---CGGGugG--GACACGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 63549 0.67 0.369215
Target:  5'- aGGUGCUCGGCggCCACCgac-GCGACg -3'
miRNA:   3'- cCCACGGGCCG--GGUGGgacaCGCUGg -5'
23262 3' -63.1 NC_005259.1 + 63865 0.68 0.2879
Target:  5'- aGGUGgCCGGCUgGCCUUGcGUGGgCg -3'
miRNA:   3'- cCCACgGGCCGGgUGGGACaCGCUgG- -5'
23262 3' -63.1 NC_005259.1 + 64771 0.66 0.402443
Target:  5'- cGGUGCgCCucggcGGCCCGCUgcgacuggCUGUGUG-CCu -3'
miRNA:   3'- cCCACG-GG-----CCGGGUGG--------GACACGCuGG- -5'
23262 3' -63.1 NC_005259.1 + 66754 0.7 0.215996
Target:  5'- --cUGCCCGGCCUGCCa-GU-CGACCg -3'
miRNA:   3'- cccACGGGCCGGGUGGgaCAcGCUGG- -5'
23262 3' -63.1 NC_005259.1 + 67426 0.71 0.205624
Target:  5'- gGGGUGCCgGGCUCACgCUUGaGCGcgucggggauGCCc -3'
miRNA:   3'- -CCCACGGgCCGGGUG-GGACaCGC----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.