Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23262 | 3' | -63.1 | NC_005259.1 | + | 45464 | 0.66 | 0.428575 |
Target: 5'- gGGGUGCCgaaCGGgCCgagcuucugGCCgCUG-GUGGCCu -3' miRNA: 3'- -CCCACGG---GCCgGG---------UGG-GACaCGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 67426 | 0.71 | 0.205624 |
Target: 5'- gGGGUGCCgGGCUCACgCUUGaGCGcgucggggauGCCc -3' miRNA: 3'- -CCCACGGgCCGGGUG-GGACaCGC----------UGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 66754 | 0.7 | 0.215996 |
Target: 5'- --cUGCCCGGCCUGCCa-GU-CGACCg -3' miRNA: 3'- cccACGGGCCGGGUGGgaCAcGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 60257 | 0.7 | 0.221348 |
Target: 5'- cGGGUGCaaggCUGGCCaccaGCgCUGccggGCGGCCa -3' miRNA: 3'- -CCCACG----GGCCGGg---UGgGACa---CGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 44508 | 0.7 | 0.226812 |
Target: 5'- gGGGUGCCCuGgCCACCCac-GCcGCCg -3' miRNA: 3'- -CCCACGGGcCgGGUGGGacaCGcUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 37045 | 0.7 | 0.243893 |
Target: 5'- uGGUGCCCGccaCCGCCCacgGCGGCg -3' miRNA: 3'- cCCACGGGCcg-GGUGGGacaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 8138 | 0.69 | 0.268315 |
Target: 5'- cGGGUGcCCCGcGCCCucguuGCUCUG-GCcauGGCCu -3' miRNA: 3'- -CCCAC-GGGC-CGGG-----UGGGACaCG---CUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 15049 | 0.69 | 0.28125 |
Target: 5'- aGGGUGCCaUGGCcgauaccguggCCACCCUG-GCccuugaGCCg -3' miRNA: 3'- -CCCACGG-GCCG-----------GGUGGGACaCGc-----UGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 63865 | 0.68 | 0.2879 |
Target: 5'- aGGUGgCCGGCUgGCCUUGcGUGGgCg -3' miRNA: 3'- cCCACgGGCCGGgUGGGACaCGCUgG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 22843 | 0.71 | 0.195687 |
Target: 5'- ---gGCCCGGCCCACCCgcagccGCaACCu -3' miRNA: 3'- cccaCGGGCCGGGUGGGaca---CGcUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 15640 | 0.71 | 0.190877 |
Target: 5'- aGGacGCCCGuCCgAUCCUGUGCGACg -3' miRNA: 3'- cCCa-CGGGCcGGgUGGGACACGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 26160 | 0.72 | 0.177066 |
Target: 5'- ---aGCCCGaaaauGCCCGCguCCUGUGCGAUCu -3' miRNA: 3'- cccaCGGGC-----CGGGUG--GGACACGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 25951 | 0.8 | 0.047473 |
Target: 5'- cGGUGCCCGGCCCGCcgacgCCUGcGaugaGACCg -3' miRNA: 3'- cCCACGGGCCGGGUG-----GGACaCg---CUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 56409 | 0.76 | 0.091792 |
Target: 5'- uGGUGCCCGGCCCGCCgaGcucaagcagagcaGCGAgCg -3' miRNA: 3'- cCCACGGGCCGGGUGGgaCa------------CGCUgG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 32905 | 0.75 | 0.103082 |
Target: 5'- aGGGUGagccaCCCGGCCCGCUCggGcGCGGCg -3' miRNA: 3'- -CCCAC-----GGGCCGGGUGGGa-CaCGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 42474 | 0.74 | 0.114468 |
Target: 5'- cGGcgagGCCCGGCCCguagagccgugACCCguccggcgGUGUGGCCa -3' miRNA: 3'- cCCa---CGGGCCGGG-----------UGGGa-------CACGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 53542 | 0.73 | 0.140837 |
Target: 5'- cGGUGCCCGGUguCgGCUCgggcgGUGCGAUCc -3' miRNA: 3'- cCCACGGGCCG--GgUGGGa----CACGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 13095 | 0.73 | 0.140837 |
Target: 5'- cGGUGCCaccgacccCGGCCCGCUCg--GCGGCUa -3' miRNA: 3'- cCCACGG--------GCCGGGUGGGacaCGCUGG- -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 9794 | 0.72 | 0.15483 |
Target: 5'- cGGuGUGCCCGcucgcgccacuaccGCCCGCaCCgccggGUGCGGCg -3' miRNA: 3'- -CC-CACGGGC--------------CGGGUG-GGa----CACGCUGg -5' |
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23262 | 3' | -63.1 | NC_005259.1 | + | 912 | 0.72 | 0.168359 |
Target: 5'- uGGUGCCCGGCgaUCACCugcugCUGcGCGACa -3' miRNA: 3'- cCCACGGGCCG--GGUGG-----GACaCGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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