miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 32216 1.1 0.00053
Target:  5'- uCAGACACCGACGCCUCGGCACCGAGCu -3'
miRNA:   3'- -GUCUGUGGCUGCGGAGCCGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 8383 0.79 0.098982
Target:  5'- -cGGCAUCGGCgagaGCCUCGGCgaGCCGGGCc -3'
miRNA:   3'- guCUGUGGCUG----CGGAGCCG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 32608 0.78 0.119516
Target:  5'- aGGACGCCGACacCCUCGaCAUCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGc-GGAGCcGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 63663 0.77 0.129479
Target:  5'- gGGACGCCgGACaCCUCgGGCACCGGcGCg -3'
miRNA:   3'- gUCUGUGG-CUGcGGAG-CCGUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 40339 0.77 0.136542
Target:  5'- cCGGACACCucGCGCCUCGaugaugaaccGCGCCGAGg -3'
miRNA:   3'- -GUCUGUGGc-UGCGGAGC----------CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 50668 0.76 0.147802
Target:  5'- aGGGCACCaGCGCgUCGGUGCCGAcgagGCg -3'
miRNA:   3'- gUCUGUGGcUGCGgAGCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 44275 0.76 0.155772
Target:  5'- -cGAgGCCGaACGCCUUGGCcaGCgCGAGCg -3'
miRNA:   3'- guCUgUGGC-UGCGGAGCCG--UG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 7176 0.75 0.182059
Target:  5'- aGGGCACCGGCgagugcccgGCCUgCGgacGCACCGGGCu -3'
miRNA:   3'- gUCUGUGGCUG---------CGGA-GC---CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 66244 0.74 0.196625
Target:  5'- gCAGcCAUCGACGCagcgCGGCccgcGCCGGGCg -3'
miRNA:   3'- -GUCuGUGGCUGCGga--GCCG----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 10081 0.74 0.206368
Target:  5'- aGGACGCCGACGaguagacCCcgaGGcCACCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGC-------GGag-CC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 68276 0.73 0.228248
Target:  5'- gUAGGCACCGuccuCGCCccauacaUCGGgAUCGGGCg -3'
miRNA:   3'- -GUCUGUGGCu---GCGG-------AGCCgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 61161 0.73 0.228248
Target:  5'- aGGACACCGAcgguguaCGCCUCGGUauggcccucGCCGGucuGCu -3'
miRNA:   3'- gUCUGUGGCU-------GCGGAGCCG---------UGGCU---CG- -5'
23264 3' -59 NC_005259.1 + 15208 0.73 0.228819
Target:  5'- -uGAUGCUGugGCgCUCGGCGCUcGGCa -3'
miRNA:   3'- guCUGUGGCugCG-GAGCCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 30362 0.73 0.252679
Target:  5'- uGGACGCCGAucugcccgcUGCC-CGGCgagaaACCGGGCc -3'
miRNA:   3'- gUCUGUGGCU---------GCGGaGCCG-----UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 17760 0.73 0.258955
Target:  5'- gAGGcCGCCGcGCGCCgggccgaGcGCACCGAGCg -3'
miRNA:   3'- gUCU-GUGGC-UGCGGag-----C-CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 29697 0.73 0.258955
Target:  5'- -cGAgACCGAUGCCgaGGCACCGAucacGCu -3'
miRNA:   3'- guCUgUGGCUGCGGagCCGUGGCU----CG- -5'
23264 3' -59 NC_005259.1 + 30763 0.72 0.278548
Target:  5'- --cAUGCCGACGCCggUGGCACCGcuGCc -3'
miRNA:   3'- gucUGUGGCUGCGGa-GCCGUGGCu-CG- -5'
23264 3' -59 NC_005259.1 + 23305 0.72 0.299303
Target:  5'- uCGGGguCCGGCGCggUCGGUgucGCCGAGCc -3'
miRNA:   3'- -GUCUguGGCUGCGg-AGCCG---UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 59385 0.72 0.299303
Target:  5'- --cGCACCG-UGCCUCcGCGCgCGAGCg -3'
miRNA:   3'- gucUGUGGCuGCGGAGcCGUG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 59102 0.71 0.321235
Target:  5'- -uGACGuuGAUGUCagcacgcgCGGCAUCGAGCa -3'
miRNA:   3'- guCUGUggCUGCGGa-------GCCGUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.