miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 3536 0.68 0.45762
Target:  5'- -cGACACCGACcacaGCCagauccgCGaGCuuGCCGAGCu -3'
miRNA:   3'- guCUGUGGCUG----CGGa------GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 3860 0.7 0.385462
Target:  5'- -cGACGCCGgucgaGCGCCUCGaGCccaccCCGcAGCg -3'
miRNA:   3'- guCUGUGGC-----UGCGGAGC-CGu----GGC-UCG- -5'
23264 3' -59 NC_005259.1 + 5193 0.68 0.45762
Target:  5'- -cGACGCCGcCGCCaagcucacCGcGCucGCCGAGCa -3'
miRNA:   3'- guCUGUGGCuGCGGa-------GC-CG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 5836 0.67 0.553787
Target:  5'- gAGACcagaacgugcgcauGCuCGuCGCCUCGGUGCuccaCGAGCa -3'
miRNA:   3'- gUCUG--------------UG-GCuGCGGAGCCGUG----GCUCG- -5'
23264 3' -59 NC_005259.1 + 6301 0.67 0.536401
Target:  5'- gCGG-UACCGAUGUCgaCGGCaugaccuaccuuGCCGGGCa -3'
miRNA:   3'- -GUCuGUGGCUGCGGa-GCCG------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 6422 0.68 0.476769
Target:  5'- -uGGC-CCGAccuCGCCgaugUCGGCACCGucGCg -3'
miRNA:   3'- guCUGuGGCU---GCGG----AGCCGUGGCu-CG- -5'
23264 3' -59 NC_005259.1 + 6518 0.66 0.577563
Target:  5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3'
miRNA:   3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 6925 0.7 0.368632
Target:  5'- gAGAacCGCCGcCGCCUUGagGCCGAGCu -3'
miRNA:   3'- gUCU--GUGGCuGCGGAGCcgUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 7176 0.75 0.182059
Target:  5'- aGGGCACCGGCgagugcccgGCCUgCGgacGCACCGGGCu -3'
miRNA:   3'- gUCUGUGGCUG---------CGGA-GC---CGUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 7855 0.69 0.429692
Target:  5'- aCGGACcgcGCCGACcCCggUGGC-CCGAGUg -3'
miRNA:   3'- -GUCUG---UGGCUGcGGa-GCCGuGGCUCG- -5'
23264 3' -59 NC_005259.1 + 8383 0.79 0.098982
Target:  5'- -cGGCAUCGGCgagaGCCUCGGCgaGCCGGGCc -3'
miRNA:   3'- guCUGUGGCUG----CGGAGCCG--UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 8481 0.67 0.556873
Target:  5'- --aGCACCG-CGCUgUCGGCACUGAu- -3'
miRNA:   3'- gucUGUGGCuGCGG-AGCCGUGGCUcg -5'
23264 3' -59 NC_005259.1 + 8512 0.67 0.526262
Target:  5'- cCAGACGCagcgagcaCGACaGCCaaUCGGCGauGAGCu -3'
miRNA:   3'- -GUCUGUG--------GCUG-CGG--AGCCGUggCUCG- -5'
23264 3' -59 NC_005259.1 + 8965 0.66 0.567194
Target:  5'- aCGGGCACCG-UGCCgggacguaGGUGCC-AGCg -3'
miRNA:   3'- -GUCUGUGGCuGCGGag------CCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 10081 0.74 0.206368
Target:  5'- aGGACGCCGACGaguagacCCcgaGGcCACCGAGCu -3'
miRNA:   3'- gUCUGUGGCUGC-------GGag-CC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 11005 0.7 0.352313
Target:  5'- -cGGCACCG-CGCCggacGCGCCGAGg -3'
miRNA:   3'- guCUGUGGCuGCGGagc-CGUGGCUCg -5'
23264 3' -59 NC_005259.1 + 12044 0.66 0.567194
Target:  5'- cCGGuacuCACCGAgGCCgagcucugCGGCagacACCGAGa -3'
miRNA:   3'- -GUCu---GUGGCUgCGGa-------GCCG----UGGCUCg -5'
23264 3' -59 NC_005259.1 + 12334 0.67 0.506209
Target:  5'- cCAGcucacGCACCGcCGCCUCGaaACCG-GCc -3'
miRNA:   3'- -GUC-----UGUGGCuGCGGAGCcgUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 12501 0.67 0.536401
Target:  5'- uCAGGCguaGCCGcuGgGCCgcUCGGCuacccguagaGCCGAGCg -3'
miRNA:   3'- -GUCUG---UGGC--UgCGG--AGCCG----------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 13010 0.66 0.598418
Target:  5'- uCGGcuACGCCGcCGCC-CGGC-CCcAGCa -3'
miRNA:   3'- -GUC--UGUGGCuGCGGaGCCGuGGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.