miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23264 3' -59 NC_005259.1 + 6518 0.66 0.577563
Target:  5'- -cGACGCCGuGCgcgcgacaaccgGCCUCGGgG-CGAGCg -3'
miRNA:   3'- guCUGUGGC-UG------------CGGAGCCgUgGCUCG- -5'
23264 3' -59 NC_005259.1 + 20166 0.66 0.567194
Target:  5'- uGGcCACCGcgcccgcCGCCUCGGCugaCGAGa -3'
miRNA:   3'- gUCuGUGGCu------GCGGAGCCGug-GCUCg -5'
23264 3' -59 NC_005259.1 + 8965 0.66 0.567194
Target:  5'- aCGGGCACCG-UGCCgggacguaGGUGCC-AGCg -3'
miRNA:   3'- -GUCUGUGGCuGCGGag------CCGUGGcUCG- -5'
23264 3' -59 NC_005259.1 + 34746 0.66 0.567194
Target:  5'- uGGugAUCGuGCGCCaaUUGGCAUCGucGGCg -3'
miRNA:   3'- gUCugUGGC-UGCGG--AGCCGUGGC--UCG- -5'
23264 3' -59 NC_005259.1 + 50021 0.66 0.567194
Target:  5'- aCGGGCgcugcguaauccGCUGugGCCUCGaCACCGccccGCa -3'
miRNA:   3'- -GUCUG------------UGGCugCGGAGCcGUGGCu---CG- -5'
23264 3' -59 NC_005259.1 + 35197 0.66 0.567194
Target:  5'- gCAG-CACCGugcCGCCUgaGGCGgCGAGg -3'
miRNA:   3'- -GUCuGUGGCu--GCGGAg-CCGUgGCUCg -5'
23264 3' -59 NC_005259.1 + 12044 0.66 0.567194
Target:  5'- cCGGuacuCACCGAgGCCgagcucugCGGCagacACCGAGa -3'
miRNA:   3'- -GUCu---GUGGCUgCGGa-------GCCG----UGGCUCg -5'
23264 3' -59 NC_005259.1 + 8481 0.67 0.556873
Target:  5'- --aGCACCG-CGCUgUCGGCACUGAu- -3'
miRNA:   3'- gucUGUGGCuGCGG-AGCCGUGGCUcg -5'
23264 3' -59 NC_005259.1 + 22698 0.67 0.556873
Target:  5'- ---cCGCCGuCGCCgucacCGGCucgaugagcuacGCCGAGCg -3'
miRNA:   3'- gucuGUGGCuGCGGa----GCCG------------UGGCUCG- -5'
23264 3' -59 NC_005259.1 + 44999 0.67 0.556873
Target:  5'- gAGGCACCGcCGaCCgcCGGgGCCGcGCc -3'
miRNA:   3'- gUCUGUGGCuGC-GGa-GCCgUGGCuCG- -5'
23264 3' -59 NC_005259.1 + 14326 0.67 0.556873
Target:  5'- -cGACGCCGcCGCCcgcgugCGGgcCGCCGAcGCc -3'
miRNA:   3'- guCUGUGGCuGCGGa-----GCC--GUGGCU-CG- -5'
23264 3' -59 NC_005259.1 + 36222 0.67 0.556873
Target:  5'- -cGAUGCCGAgCaCCUUGGCcaGCgCGAGCg -3'
miRNA:   3'- guCUGUGGCU-GcGGAGCCG--UG-GCUCG- -5'
23264 3' -59 NC_005259.1 + 5836 0.67 0.553787
Target:  5'- gAGACcagaacgugcgcauGCuCGuCGCCUCGGUGCuccaCGAGCa -3'
miRNA:   3'- gUCUG--------------UG-GCuGCGGAGCCGUG----GCUCG- -5'
23264 3' -59 NC_005259.1 + 45741 0.67 0.550706
Target:  5'- -cGAgGCCGcgcacCGCCUCGGggaugagcacgcccuCGCCGGGUg -3'
miRNA:   3'- guCUgUGGCu----GCGGAGCC---------------GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 58859 0.67 0.546606
Target:  5'- uCGGGCucGCCGucgucgucguCGCCUCGGCAUCGc-- -3'
miRNA:   3'- -GUCUG--UGGCu---------GCGGAGCCGUGGCucg -5'
23264 3' -59 NC_005259.1 + 58746 0.67 0.546606
Target:  5'- -cGGCACCGGCGaagUUCGGCGaacgacgcugCGGGCg -3'
miRNA:   3'- guCUGUGGCUGCg--GAGCCGUg---------GCUCG- -5'
23264 3' -59 NC_005259.1 + 23005 0.67 0.546606
Target:  5'- gAGGuCACCGAggaCGgCUCGGuCAUCGAGa -3'
miRNA:   3'- gUCU-GUGGCU---GCgGAGCC-GUGGCUCg -5'
23264 3' -59 NC_005259.1 + 62861 0.67 0.536401
Target:  5'- gCAGcCGCuCGGCGCgagguaggccgCUCGGuCAUUGAGCg -3'
miRNA:   3'- -GUCuGUG-GCUGCG-----------GAGCC-GUGGCUCG- -5'
23264 3' -59 NC_005259.1 + 68416 0.67 0.536401
Target:  5'- gUAGACcUUGACGCCUCGcGCggGCCGGu- -3'
miRNA:   3'- -GUCUGuGGCUGCGGAGC-CG--UGGCUcg -5'
23264 3' -59 NC_005259.1 + 50409 0.67 0.536401
Target:  5'- gAGcGCGCCGGUGCCUugacCGGC-UCGGGCa -3'
miRNA:   3'- gUC-UGUGGCUGCGGA----GCCGuGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.