miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23265 5' -56.9 NC_005259.1 + 50410 0.66 0.723805
Target:  5'- aGCGCgCCGGUGccuugaccgGC-UCGGgcAGCGguGCg -3'
miRNA:   3'- -CGUGgGGCCAC---------UGuAGCC--UCGUguCG- -5'
23265 5' -56.9 NC_005259.1 + 16699 0.66 0.703032
Target:  5'- gGCACCgaGGUGACcgCcGAGCAgGucGCg -3'
miRNA:   3'- -CGUGGggCCACUGuaGcCUCGUgU--CG- -5'
23265 5' -56.9 NC_005259.1 + 58903 0.66 0.696746
Target:  5'- uCACCCuCGGgcucgucggcggucuUGuCGUCGGcgGGCGCGGUg -3'
miRNA:   3'- cGUGGG-GCC---------------ACuGUAGCC--UCGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 53532 0.66 0.692544
Target:  5'- gGCACgggcucggugCCCGGUGuCGgcUCGG-GCGguGCg -3'
miRNA:   3'- -CGUG----------GGGCCACuGU--AGCCuCGUguCG- -5'
23265 5' -56.9 NC_005259.1 + 23275 0.66 0.692544
Target:  5'- aGCACCaagaccgggcgCGGUGGuugggUAUCGGGGUcCGGCg -3'
miRNA:   3'- -CGUGGg----------GCCACU-----GUAGCCUCGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 41263 0.66 0.691491
Target:  5'- cCGCCCCGGUcGAgcacccuCGUCGGcGCACu-- -3'
miRNA:   3'- cGUGGGGCCA-CU-------GUAGCCuCGUGucg -5'
23265 5' -56.9 NC_005259.1 + 42542 0.66 0.682
Target:  5'- gGCACCgaGGUGGCGggcagcUCGGcGaGCAGCc -3'
miRNA:   3'- -CGUGGggCCACUGU------AGCCuCgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 1580 0.66 0.680943
Target:  5'- cGCGCCCCacaccgaGGUcGAgGUCaGGGCACAa- -3'
miRNA:   3'- -CGUGGGG-------CCA-CUgUAGcCUCGUGUcg -5'
23265 5' -56.9 NC_005259.1 + 16238 0.66 0.671412
Target:  5'- cGCACCCCGGUGcugcGCAcCGaccGAGCAgAu- -3'
miRNA:   3'- -CGUGGGGCCAC----UGUaGC---CUCGUgUcg -5'
23265 5' -56.9 NC_005259.1 + 66185 0.66 0.671412
Target:  5'- gGCACCgcugCCGGUG-CAguaCGGgucaGGCGCGGUc -3'
miRNA:   3'- -CGUGG----GGCCACuGUa--GCC----UCGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 49445 0.67 0.660789
Target:  5'- cCGCCuuGGUcGGCAgcCGGAuGCcCAGCa -3'
miRNA:   3'- cGUGGggCCA-CUGUa-GCCU-CGuGUCG- -5'
23265 5' -56.9 NC_005259.1 + 32558 0.67 0.660789
Target:  5'- cCGCCCCGGcGAgCG-CGGGG-AUAGCg -3'
miRNA:   3'- cGUGGGGCCaCU-GUaGCCUCgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 64019 0.67 0.651207
Target:  5'- cGCGCCcgaggcgcggcgaggCCGGUGACcggaucuuucucuuGcCGGAucaGCACGGCg -3'
miRNA:   3'- -CGUGG---------------GGCCACUG--------------UaGCCU---CGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 2288 0.67 0.650141
Target:  5'- gGCuAUCCCGGUuucuGAUacaGUCGGcauucuGGUACAGCg -3'
miRNA:   3'- -CG-UGGGGCCA----CUG---UAGCC------UCGUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 68755 0.67 0.650141
Target:  5'- -gACCCCGGcGACcucgccAUCGGuGUACuugAGCa -3'
miRNA:   3'- cgUGGGGCCaCUG------UAGCCuCGUG---UCG- -5'
23265 5' -56.9 NC_005259.1 + 65871 0.67 0.650141
Target:  5'- -uGCCCCGGUGGggcggucaAUCGGcGGgACGGUc -3'
miRNA:   3'- cgUGGGGCCACUg-------UAGCC-UCgUGUCG- -5'
23265 5' -56.9 NC_005259.1 + 38614 0.67 0.639477
Target:  5'- -gACCuuGGUGaACAUCGaGGGCGguGa -3'
miRNA:   3'- cgUGGggCCAC-UGUAGC-CUCGUguCg -5'
23265 5' -56.9 NC_005259.1 + 4531 0.67 0.637344
Target:  5'- gGCACCCCGGUcGAUugugcccagugCGG-GCACGa- -3'
miRNA:   3'- -CGUGGGGCCA-CUGua---------GCCuCGUGUcg -5'
23265 5' -56.9 NC_005259.1 + 29946 0.67 0.628807
Target:  5'- cGCGgCCCGGUcGCGgcuggUGGGGCggGCGGUg -3'
miRNA:   3'- -CGUgGGGCCAcUGUa----GCCUCG--UGUCG- -5'
23265 5' -56.9 NC_005259.1 + 57291 0.67 0.61814
Target:  5'- gGCACCUCGuaGUgcacGACAUCG-AGCAcCGGCg -3'
miRNA:   3'- -CGUGGGGC--CA----CUGUAGCcUCGU-GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.