Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23271 | 5' | -61.9 | NC_005259.1 | + | 21961 | 0.7 | 0.243811 |
Target: 5'- aGGCGUGACCcgcgugggUGUCGUucuccccaCCGGCacCGGCa -3' miRNA: 3'- -UCGCACUGGa-------ACGGCG--------GGCCGa-GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 20478 | 0.7 | 0.237909 |
Target: 5'- cGcCGUcGACCUcgacaCCGCCCGGCagcucaUCGGCg -3' miRNA: 3'- uC-GCA-CUGGAac---GGCGGGCCG------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 32538 | 0.7 | 0.232127 |
Target: 5'- aGGCuUGACCUUGCUGuuggccgcCCCGGCgagcgCGGg -3' miRNA: 3'- -UCGcACUGGAACGGC--------GGGCCGa----GCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 12503 | 0.69 | 0.295473 |
Target: 5'- aGGCGUaGCCgcuggGCCGCUCGGCUacccguagagcCGaGCg -3' miRNA: 3'- -UCGCAcUGGaa---CGGCGGGCCGA-----------GC-CG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 60142 | 0.69 | 0.294778 |
Target: 5'- uGCGcGGCCUUgGCCGCCgccucagCGGCcucacgggCGGCg -3' miRNA: 3'- uCGCaCUGGAA-CGGCGG-------GCCGa-------GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 35183 | 0.69 | 0.288575 |
Target: 5'- uGGCGUGccggugagcagcACCgUGCCGCCUGaggCGGCg -3' miRNA: 3'- -UCGCAC------------UGGaACGGCGGGCcgaGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 41213 | 0.69 | 0.281805 |
Target: 5'- cGGUGUgGAUCgucaCGCCCuGCUCGGCg -3' miRNA: 3'- -UCGCA-CUGGaacgGCGGGcCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 8859 | 0.69 | 0.281805 |
Target: 5'- cAGCGUGcccgccGCCUgccgcacccacGCCGCCUGagcgucacGCUCGGCc -3' miRNA: 3'- -UCGCAC------UGGAa----------CGGCGGGC--------CGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 17333 | 0.69 | 0.268642 |
Target: 5'- gGGUGUG-CCggucaacGUCGCCgucgaggucggCGGCUCGGCg -3' miRNA: 3'- -UCGCACuGGaa-----CGGCGG-----------GCCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 67745 | 0.68 | 0.355263 |
Target: 5'- cGGCGgccACUagGCCGcCCCGGCcacCGGCc -3' miRNA: 3'- -UCGCac-UGGaaCGGC-GGGCCGa--GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 36602 | 0.68 | 0.355263 |
Target: 5'- cGCGUacguaaacgcGAcCCUUGCCGCCCGcGCcgcccgcaaGGCc -3' miRNA: 3'- uCGCA----------CU-GGAACGGCGGGC-CGag-------CCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 63575 | 0.68 | 0.344991 |
Target: 5'- gAGCGgGAUauacGCCGCCUGGCUguucucguccuccaUGGCg -3' miRNA: 3'- -UCGCaCUGgaa-CGGCGGGCCGA--------------GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 56903 | 0.68 | 0.339548 |
Target: 5'- cAGCGUGGCC--GCCGCagcaGGCgugcccgcgUCGGUg -3' miRNA: 3'- -UCGCACUGGaaCGGCGgg--CCG---------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 34352 | 0.68 | 0.331882 |
Target: 5'- cGaCGUGACCca-CCGCCgGuaUCGGCg -3' miRNA: 3'- uC-GCACUGGaacGGCGGgCcgAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 32177 | 0.68 | 0.331882 |
Target: 5'- cGCGUGAgCUcGCUGCgCGcCUCGGUc -3' miRNA: 3'- uCGCACUgGAaCGGCGgGCcGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 31245 | 0.68 | 0.307493 |
Target: 5'- gGGCGcGGCggUGCCGCCCcacacgccgcaguaGGCggUGGCg -3' miRNA: 3'- -UCGCaCUGgaACGGCGGG--------------CCGa-GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 30107 | 0.67 | 0.37066 |
Target: 5'- gAGCuGUGugCaucggcaUUGCCGUCCGGCugcgauaccUCGGg -3' miRNA: 3'- -UCG-CACugG-------AACGGCGGGCCG---------AGCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 9538 | 0.67 | 0.371483 |
Target: 5'- cGgGUcACCggagaGCUGCCCGGCcucgaccgcgUCGGCg -3' miRNA: 3'- uCgCAcUGGaa---CGGCGGGCCG----------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 26491 | 0.67 | 0.371483 |
Target: 5'- cGCGgaacgccgcGAgCUcGCCGCCCGGCgagaagagcgCGGUg -3' miRNA: 3'- uCGCa--------CUgGAaCGGCGGGCCGa---------GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 51526 | 0.67 | 0.371483 |
Target: 5'- cGCGUGACCUcgUGCacgggGCCgGGCaaGuGCa -3' miRNA: 3'- uCGCACUGGA--ACGg----CGGgCCGagC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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