miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23271 5' -61.9 NC_005259.1 + 29933 0.79 0.059087
Target:  5'- cGCGUGGCCgccacGCgGCCCGGUcgCGGCu -3'
miRNA:   3'- uCGCACUGGaa---CGgCGGGCCGa-GCCG- -5'
23271 5' -61.9 NC_005259.1 + 30107 0.67 0.37066
Target:  5'- gAGCuGUGugCaucggcaUUGCCGUCCGGCugcgauaccUCGGg -3'
miRNA:   3'- -UCG-CACugG-------AACGGCGGGCCG---------AGCCg -5'
23271 5' -61.9 NC_005259.1 + 31245 0.68 0.307493
Target:  5'- gGGCGcGGCggUGCCGCCCcacacgccgcaguaGGCggUGGCg -3'
miRNA:   3'- -UCGCaCUGgaACGGCGGG--------------CCGa-GCCG- -5'
23271 5' -61.9 NC_005259.1 + 31879 0.73 0.167259
Target:  5'- cGGuCGUGACCUcGCCggucucaagGCCCGGCgCGaGCg -3'
miRNA:   3'- -UC-GCACUGGAaCGG---------CGGGCCGaGC-CG- -5'
23271 5' -61.9 NC_005259.1 + 32177 0.68 0.331882
Target:  5'- cGCGUGAgCUcGCUGCgCGcCUCGGUc -3'
miRNA:   3'- uCGCACUgGAaCGGCGgGCcGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 32377 0.66 0.441211
Target:  5'- gGGCG-GGCaCUgcccGCCGUCgCGauaGCUCGGCu -3'
miRNA:   3'- -UCGCaCUG-GAa---CGGCGG-GC---CGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 32538 0.7 0.232127
Target:  5'- aGGCuUGACCUUGCUGuuggccgcCCCGGCgagcgCGGg -3'
miRNA:   3'- -UCGcACUGGAACGGC--------GGGCCGa----GCCg -5'
23271 5' -61.9 NC_005259.1 + 33141 0.71 0.199883
Target:  5'- cGCGUGAUCUUGCCGUagaCCGcCUgaGGCa -3'
miRNA:   3'- uCGCACUGGAACGGCG---GGCcGAg-CCG- -5'
23271 5' -61.9 NC_005259.1 + 33998 0.66 0.459774
Target:  5'- uGCgGUGAgCUgcaaccgGCUGUauCCGGCcUCGGCg -3'
miRNA:   3'- uCG-CACUgGAa------CGGCG--GGCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 34352 0.68 0.331882
Target:  5'- cGaCGUGACCca-CCGCCgGuaUCGGCg -3'
miRNA:   3'- uC-GCACUGGaacGGCGGgCcgAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 34861 0.66 0.459774
Target:  5'- aGGCGUGuCCUcgucggUGCCGgaCCGGggugcCUCGGg -3'
miRNA:   3'- -UCGCACuGGA------ACGGCg-GGCC-----GAGCCg -5'
23271 5' -61.9 NC_005259.1 + 35183 0.69 0.288575
Target:  5'- uGGCGUGccggugagcagcACCgUGCCGCCUGaggCGGCg -3'
miRNA:   3'- -UCGCAC------------UGGaACGGCGGGCcgaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 36602 0.68 0.355263
Target:  5'- cGCGUacguaaacgcGAcCCUUGCCGCCCGcGCcgcccgcaaGGCc -3'
miRNA:   3'- uCGCA----------CU-GGAACGGCGGGC-CGag-------CCG- -5'
23271 5' -61.9 NC_005259.1 + 37264 0.67 0.376446
Target:  5'- uGCcaGGCUUgagGCCGCCCGGCaggacuugcauggCGGUg -3'
miRNA:   3'- uCGcaCUGGAa--CGGCGGGCCGa------------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 37467 0.66 0.414184
Target:  5'- uGGC-UGGCCacGCCGCCguUGGCUgacccaccccCGGCg -3'
miRNA:   3'- -UCGcACUGGaaCGGCGG--GCCGA----------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 38742 0.66 0.459774
Target:  5'- cGGCgGUGGCCc-GCCGCa-GGC-CGGUg -3'
miRNA:   3'- -UCG-CACUGGaaCGGCGggCCGaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 41213 0.69 0.281805
Target:  5'- cGGUGUgGAUCgucaCGCCCuGCUCGGCg -3'
miRNA:   3'- -UCGCA-CUGGaacgGCGGGcCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 42511 0.74 0.128933
Target:  5'- cGGUGUGGCCagcaGCCGUCCGGCcccgaUgGGCa -3'
miRNA:   3'- -UCGCACUGGaa--CGGCGGGCCG-----AgCCG- -5'
23271 5' -61.9 NC_005259.1 + 43239 0.72 0.17606
Target:  5'- gAGCGagcUGACgaUGCCGCCCGcGC-CGGg -3'
miRNA:   3'- -UCGC---ACUGgaACGGCGGGC-CGaGCCg -5'
23271 5' -61.9 NC_005259.1 + 44321 0.67 0.378945
Target:  5'- gAGCGUGuugagcGCCgcguaGCUGCCgGGCUuguuccaCGGCu -3'
miRNA:   3'- -UCGCAC------UGGaa---CGGCGGgCCGA-------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.