miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23271 5' -61.9 NC_005259.1 + 142 0.71 0.199883
Target:  5'- cGGCaaGACCUacuggGCuCGCCCGGCggggucCGGCa -3'
miRNA:   3'- -UCGcaCUGGAa----CG-GCGGGCCGa-----GCCG- -5'
23271 5' -61.9 NC_005259.1 + 6569 0.66 0.45044
Target:  5'- cGGCGUGuCag-GCCGCCUcggacaaauGGCUCGa- -3'
miRNA:   3'- -UCGCACuGgaaCGGCGGG---------CCGAGCcg -5'
23271 5' -61.9 NC_005259.1 + 7908 0.7 0.262249
Target:  5'- uAGCGcaccACCUUGCCGCCCuuGGuCUCgugGGCc -3'
miRNA:   3'- -UCGCac--UGGAACGGCGGG--CC-GAG---CCG- -5'
23271 5' -61.9 NC_005259.1 + 8093 0.71 0.226464
Target:  5'- uGGCGUGACCgUGCgauccuggcagaCcCCCGGCcuagUCGGCu -3'
miRNA:   3'- -UCGCACUGGaACG------------GcGGGCCG----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 8859 0.69 0.281805
Target:  5'- cAGCGUGcccgccGCCUgccgcacccacGCCGCCUGagcgucacGCUCGGCc -3'
miRNA:   3'- -UCGCAC------UGGAa----------CGGCGGGC--------CGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 9538 0.67 0.371483
Target:  5'- cGgGUcACCggagaGCUGCCCGGCcucgaccgcgUCGGCg -3'
miRNA:   3'- uCgCAcUGGaa---CGGCGGGCCG----------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 12503 0.69 0.295473
Target:  5'- aGGCGUaGCCgcuggGCCGCUCGGCUacccguagagcCGaGCg -3'
miRNA:   3'- -UCGCAcUGGaa---CGGCGGGCCGA-----------GC-CG- -5'
23271 5' -61.9 NC_005259.1 + 17333 0.69 0.268642
Target:  5'- gGGUGUG-CCggucaacGUCGCCgucgaggucggCGGCUCGGCg -3'
miRNA:   3'- -UCGCACuGGaa-----CGGCGG-----------GCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 17504 0.7 0.249834
Target:  5'- cGGC--GACCUUGCCGaUCCGaGCUCgugGGCa -3'
miRNA:   3'- -UCGcaCUGGAACGGC-GGGC-CGAG---CCG- -5'
23271 5' -61.9 NC_005259.1 + 18706 0.8 0.046148
Target:  5'- cGGCGgucUGACCUcgaucaucggGCCGCCCGGCaUCGGUa -3'
miRNA:   3'- -UCGC---ACUGGAa---------CGGCGGGCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 18964 0.7 0.249834
Target:  5'- uGGgGUGACCUcGCCgcguacaucGCCCGGCacgagaUCGGa -3'
miRNA:   3'- -UCgCACUGGAaCGG---------CGGGCCG------AGCCg -5'
23271 5' -61.9 NC_005259.1 + 19947 0.74 0.122311
Target:  5'- cGCGUGugCgu-CCGCaacggCGGCUCGGCg -3'
miRNA:   3'- uCGCACugGaacGGCGg----GCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 20478 0.7 0.237909
Target:  5'- cGcCGUcGACCUcgacaCCGCCCGGCagcucaUCGGCg -3'
miRNA:   3'- uC-GCA-CUGGAac---GGCGGGCCG------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 21961 0.7 0.243811
Target:  5'- aGGCGUGACCcgcgugggUGUCGUucuccccaCCGGCacCGGCa -3'
miRNA:   3'- -UCGCACUGGa-------ACGGCG--------GGCCGa-GCCG- -5'
23271 5' -61.9 NC_005259.1 + 22824 0.67 0.396742
Target:  5'- uGUGUGACUgcGUCGUgCUGGCcCGGCc -3'
miRNA:   3'- uCGCACUGGaaCGGCG-GGCCGaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 23615 0.7 0.262249
Target:  5'- cGCGUGGCg--GCaGCCagaCGGCUCGGUg -3'
miRNA:   3'- uCGCACUGgaaCGgCGG---GCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 23708 0.67 0.396742
Target:  5'- cGuCGUGAUCgcGCCGgaCGGUUCGGUg -3'
miRNA:   3'- uC-GCACUGGaaCGGCggGCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 26491 0.67 0.371483
Target:  5'- cGCGgaacgccgcGAgCUcGCCGCCCGGCgagaagagcgCGGUg -3'
miRNA:   3'- uCGCa--------CUgGAaCGGCGGGCCGa---------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 28316 0.66 0.459774
Target:  5'- cAGCGUaGAUCggugUGCCGUCCuuggCGGCg -3'
miRNA:   3'- -UCGCA-CUGGa---ACGGCGGGccgaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 29455 1.11 0.000222
Target:  5'- cAGCGUGACCUUGCCGCCCGGCUCGGCa -3'
miRNA:   3'- -UCGCACUGGAACGGCGGGCCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.