miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23271 5' -61.9 NC_005259.1 + 67745 0.68 0.355263
Target:  5'- cGGCGgccACUagGCCGcCCCGGCcacCGGCc -3'
miRNA:   3'- -UCGCac-UGGaaCGGC-GGGCCGa--GCCG- -5'
23271 5' -61.9 NC_005259.1 + 65274 0.66 0.459774
Target:  5'- gAGgGUGugUgggUGCUGCCgUGGaucuUCGGCa -3'
miRNA:   3'- -UCgCACugGa--ACGGCGG-GCCg---AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 64132 0.67 0.371483
Target:  5'- cGCcUGACCgaGCgGCCCG--UCGGCg -3'
miRNA:   3'- uCGcACUGGaaCGgCGGGCcgAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 63575 0.68 0.344991
Target:  5'- gAGCGgGAUauacGCCGCCUGGCUguucucguccuccaUGGCg -3'
miRNA:   3'- -UCGCaCUGgaa-CGGCGGGCCGA--------------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 61053 0.7 0.262249
Target:  5'- gGGCGgcucACCUUG-UGCCgGGCaUCGGCa -3'
miRNA:   3'- -UCGCac--UGGAACgGCGGgCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 60142 0.69 0.294778
Target:  5'- uGCGcGGCCUUgGCCGCCgccucagCGGCcucacgggCGGCg -3'
miRNA:   3'- uCGCaCUGGAA-CGGCGG-------GCCGa-------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 59405 0.73 0.146961
Target:  5'- gAGCGUGACCUcG-CGCauGGCgUCGGCg -3'
miRNA:   3'- -UCGCACUGGAaCgGCGggCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 58949 0.66 0.43209
Target:  5'- cAGCGUcGGCCUUgGCCagcagGUCgGGCagcucgUCGGCg -3'
miRNA:   3'- -UCGCA-CUGGAA-CGG-----CGGgCCG------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 57788 0.67 0.395883
Target:  5'- cGCGUcggagacguugaaGACCUcgacGCCGCCCgcacgcauGGCcagaUCGGCa -3'
miRNA:   3'- uCGCA-------------CUGGAa---CGGCGGG--------CCG----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 56903 0.68 0.339548
Target:  5'- cAGCGUGGCC--GCCGCagcaGGCgugcccgcgUCGGUg -3'
miRNA:   3'- -UCGCACUGGaaCGGCGgg--CCG---------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 56259 0.75 0.104019
Target:  5'- cGGCG--GCCUUgagcgccGCCGCCCGGCccguaUCGGCa -3'
miRNA:   3'- -UCGCacUGGAA-------CGGCGGGCCG-----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 53521 0.67 0.36331
Target:  5'- -uCGUGGCCa-GCgGCaCgGGCUCGGUg -3'
miRNA:   3'- ucGCACUGGaaCGgCG-GgCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 52956 0.66 0.43209
Target:  5'- aAGCacccGCC--GCUGCCCGGCugcaUCGGCa -3'
miRNA:   3'- -UCGcac-UGGaaCGGCGGGCCG----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 51824 0.7 0.249834
Target:  5'- gGGCG-GGCagacCCGCCCGGUugaUCGGCc -3'
miRNA:   3'- -UCGCaCUGgaacGGCGGGCCG---AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 51526 0.67 0.371483
Target:  5'- cGCGUGACCUcgUGCacgggGCCgGGCaaGuGCa -3'
miRNA:   3'- uCGCACUGGA--ACGg----CGGgCCGagC-CG- -5'
23271 5' -61.9 NC_005259.1 + 50409 0.66 0.42308
Target:  5'- gAGCGc-GCCggUGCCuugaCCGGCUCGGg -3'
miRNA:   3'- -UCGCacUGGa-ACGGcg--GGCCGAGCCg -5'
23271 5' -61.9 NC_005259.1 + 46577 0.72 0.1848
Target:  5'- cGGCGUcGACCgcGCCGCCCgaGGCgagcagcgcgucgUUGGCg -3'
miRNA:   3'- -UCGCA-CUGGaaCGGCGGG--CCG-------------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 45335 0.72 0.190034
Target:  5'- uGCGUGGCCUgcGCCGCCUgGGC-CGccGCg -3'
miRNA:   3'- uCGCACUGGAa-CGGCGGG-CCGaGC--CG- -5'
23271 5' -61.9 NC_005259.1 + 44636 0.66 0.459774
Target:  5'- uGCGccuUGACCggugccGCCGCCCGaCUCGa- -3'
miRNA:   3'- uCGC---ACUGGaa----CGGCGGGCcGAGCcg -5'
23271 5' -61.9 NC_005259.1 + 44321 0.67 0.378945
Target:  5'- gAGCGUGuugagcGCCgcguaGCUGCCgGGCUuguuccaCGGCu -3'
miRNA:   3'- -UCGCAC------UGGaa---CGGCGGgCCGA-------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.