Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23271 | 5' | -61.9 | NC_005259.1 | + | 45335 | 0.72 | 0.190034 |
Target: 5'- uGCGUGGCCUgcGCCGCCUgGGC-CGccGCg -3' miRNA: 3'- uCGCACUGGAa-CGGCGGG-CCGaGC--CG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 28316 | 0.66 | 0.459774 |
Target: 5'- cAGCGUaGAUCggugUGCCGUCCuuggCGGCg -3' miRNA: 3'- -UCGCA-CUGGa---ACGGCGGGccgaGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 51824 | 0.7 | 0.249834 |
Target: 5'- gGGCG-GGCagacCCGCCCGGUugaUCGGCc -3' miRNA: 3'- -UCGCaCUGgaacGGCGGGCCG---AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 17504 | 0.7 | 0.249834 |
Target: 5'- cGGC--GACCUUGCCGaUCCGaGCUCgugGGCa -3' miRNA: 3'- -UCGcaCUGGAACGGC-GGGC-CGAG---CCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 18964 | 0.7 | 0.249834 |
Target: 5'- uGGgGUGACCUcGCCgcguacaucGCCCGGCacgagaUCGGa -3' miRNA: 3'- -UCgCACUGGAaCGG---------CGGGCCG------AGCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 21961 | 0.7 | 0.243811 |
Target: 5'- aGGCGUGACCcgcgugggUGUCGUucuccccaCCGGCacCGGCa -3' miRNA: 3'- -UCGCACUGGa-------ACGGCG--------GGCCGa-GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 20478 | 0.7 | 0.237909 |
Target: 5'- cGcCGUcGACCUcgacaCCGCCCGGCagcucaUCGGCg -3' miRNA: 3'- uC-GCA-CUGGAac---GGCGGGCCG------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 32538 | 0.7 | 0.232127 |
Target: 5'- aGGCuUGACCUUGCUGuuggccgcCCCGGCgagcgCGGg -3' miRNA: 3'- -UCGcACUGGAACGGC--------GGGCCGa----GCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 8093 | 0.71 | 0.226464 |
Target: 5'- uGGCGUGACCgUGCgauccuggcagaCcCCCGGCcuagUCGGCu -3' miRNA: 3'- -UCGCACUGGaACG------------GcGGGCCG----AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 142 | 0.71 | 0.199883 |
Target: 5'- cGGCaaGACCUacuggGCuCGCCCGGCggggucCGGCa -3' miRNA: 3'- -UCGcaCUGGAa----CG-GCGGGCCGa-----GCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 33141 | 0.71 | 0.199883 |
Target: 5'- cGCGUGAUCUUGCCGUagaCCGcCUgaGGCa -3' miRNA: 3'- uCGCACUGGAACGGCG---GGCcGAg-CCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 29455 | 1.11 | 0.000222 |
Target: 5'- cAGCGUGACCUUGCCGCCCGGCUCGGCa -3' miRNA: 3'- -UCGCACUGGAACGGCGGGCCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 46577 | 0.72 | 0.1848 |
Target: 5'- cGGCGUcGACCgcGCCGCCCgaGGCgagcagcgcgucgUUGGCg -3' miRNA: 3'- -UCGCA-CUGGaaCGGCGGG--CCG-------------AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 43239 | 0.72 | 0.17606 |
Target: 5'- gAGCGagcUGACgaUGCCGCCCGcGC-CGGg -3' miRNA: 3'- -UCGC---ACUGgaACGGCGGGC-CGaGCCg -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 31879 | 0.73 | 0.167259 |
Target: 5'- cGGuCGUGACCUcGCCggucucaagGCCCGGCgCGaGCg -3' miRNA: 3'- -UC-GCACUGGAaCGG---------CGGGCCGaGC-CG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 59405 | 0.73 | 0.146961 |
Target: 5'- gAGCGUGACCUcG-CGCauGGCgUCGGCg -3' miRNA: 3'- -UCGCACUGGAaCgGCGggCCG-AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 42511 | 0.74 | 0.128933 |
Target: 5'- cGGUGUGGCCagcaGCCGUCCGGCcccgaUgGGCa -3' miRNA: 3'- -UCGCACUGGaa--CGGCGGGCCG-----AgCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 19947 | 0.74 | 0.122311 |
Target: 5'- cGCGUGugCgu-CCGCaacggCGGCUCGGCg -3' miRNA: 3'- uCGCACugGaacGGCGg----GCCGAGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 56259 | 0.75 | 0.104019 |
Target: 5'- cGGCG--GCCUUgagcgccGCCGCCCGGCccguaUCGGCa -3' miRNA: 3'- -UCGCacUGGAA-------CGGCGGGCCG-----AGCCG- -5' |
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23271 | 5' | -61.9 | NC_005259.1 | + | 29933 | 0.79 | 0.059087 |
Target: 5'- cGCGUGGCCgccacGCgGCCCGGUcgCGGCu -3' miRNA: 3'- uCGCACUGGaa---CGgCGGGCCGa-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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