miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23271 5' -61.9 NC_005259.1 + 6569 0.66 0.45044
Target:  5'- cGGCGUGuCag-GCCGCCUcggacaaauGGCUCGa- -3'
miRNA:   3'- -UCGCACuGgaaCGGCGGG---------CCGAGCcg -5'
23271 5' -61.9 NC_005259.1 + 65274 0.66 0.459774
Target:  5'- gAGgGUGugUgggUGCUGCCgUGGaucuUCGGCa -3'
miRNA:   3'- -UCgCACugGa--ACGGCGG-GCCg---AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 58949 0.66 0.43209
Target:  5'- cAGCGUcGGCCUUgGCCagcagGUCgGGCagcucgUCGGCg -3'
miRNA:   3'- -UCGCA-CUGGAA-CGG-----CGGgCCG------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 37467 0.66 0.414184
Target:  5'- uGGC-UGGCCacGCCGCCguUGGCUgacccaccccCGGCg -3'
miRNA:   3'- -UCGcACUGGaaCGGCGG--GCCGA----------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 50409 0.66 0.42308
Target:  5'- gAGCGc-GCCggUGCCuugaCCGGCUCGGg -3'
miRNA:   3'- -UCGCacUGGa-ACGGcg--GGCCGAGCCg -5'
23271 5' -61.9 NC_005259.1 + 33998 0.66 0.459774
Target:  5'- uGCgGUGAgCUgcaaccgGCUGUauCCGGCcUCGGCg -3'
miRNA:   3'- uCG-CACUgGAa------CGGCG--GGCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 32377 0.66 0.441211
Target:  5'- gGGCG-GGCaCUgcccGCCGUCgCGauaGCUCGGCu -3'
miRNA:   3'- -UCGCaCUG-GAa---CGGCGG-GC---CGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 34861 0.66 0.459774
Target:  5'- aGGCGUGuCCUcgucggUGCCGgaCCGGggugcCUCGGg -3'
miRNA:   3'- -UCGCACuGGA------ACGGCg-GGCC-----GAGCCg -5'
23271 5' -61.9 NC_005259.1 + 44636 0.66 0.459774
Target:  5'- uGCGccuUGACCggugccGCCGCCCGaCUCGa- -3'
miRNA:   3'- uCGC---ACUGGaa----CGGCGGGCcGAGCcg -5'
23271 5' -61.9 NC_005259.1 + 38742 0.66 0.459774
Target:  5'- cGGCgGUGGCCc-GCCGCa-GGC-CGGUg -3'
miRNA:   3'- -UCG-CACUGGaaCGGCGggCCGaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 52956 0.66 0.43209
Target:  5'- aAGCacccGCC--GCUGCCCGGCugcaUCGGCa -3'
miRNA:   3'- -UCGcac-UGGaaCGGCGGGCCG----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 28316 0.66 0.459774
Target:  5'- cAGCGUaGAUCggugUGCCGUCCuuggCGGCg -3'
miRNA:   3'- -UCGCA-CUGGa---ACGGCGGGccgaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 64132 0.67 0.371483
Target:  5'- cGCcUGACCgaGCgGCCCG--UCGGCg -3'
miRNA:   3'- uCGcACUGGaaCGgCGGGCcgAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 51526 0.67 0.371483
Target:  5'- cGCGUGACCUcgUGCacgggGCCgGGCaaGuGCa -3'
miRNA:   3'- uCGCACUGGA--ACGg----CGGgCCGagC-CG- -5'
23271 5' -61.9 NC_005259.1 + 26491 0.67 0.371483
Target:  5'- cGCGgaacgccgcGAgCUcGCCGCCCGGCgagaagagcgCGGUg -3'
miRNA:   3'- uCGCa--------CUgGAaCGGCGGGCCGa---------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 9538 0.67 0.371483
Target:  5'- cGgGUcACCggagaGCUGCCCGGCcucgaccgcgUCGGCg -3'
miRNA:   3'- uCgCAcUGGaa---CGGCGGGCCG----------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 53521 0.67 0.36331
Target:  5'- -uCGUGGCCa-GCgGCaCgGGCUCGGUg -3'
miRNA:   3'- ucGCACUGGaaCGgCG-GgCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 44321 0.67 0.378945
Target:  5'- gAGCGUGuugagcGCCgcguaGCUGCCgGGCUuguuccaCGGCu -3'
miRNA:   3'- -UCGCAC------UGGaa---CGGCGGgCCGA-------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 57788 0.67 0.395883
Target:  5'- cGCGUcggagacguugaaGACCUcgacGCCGCCCgcacgcauGGCcagaUCGGCa -3'
miRNA:   3'- uCGCA-------------CUGGAa---CGGCGGG--------CCG----AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 22824 0.67 0.396742
Target:  5'- uGUGUGACUgcGUCGUgCUGGCcCGGCc -3'
miRNA:   3'- uCGCACUGGaaCGGCG-GGCCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.