miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23271 5' -61.9 NC_005259.1 + 51526 0.67 0.371483
Target:  5'- cGCGUGACCUcgUGCacgggGCCgGGCaaGuGCa -3'
miRNA:   3'- uCGCACUGGA--ACGg----CGGgCCGagC-CG- -5'
23271 5' -61.9 NC_005259.1 + 30107 0.67 0.37066
Target:  5'- gAGCuGUGugCaucggcaUUGCCGUCCGGCugcgauaccUCGGg -3'
miRNA:   3'- -UCG-CACugG-------AACGGCGGGCCG---------AGCCg -5'
23271 5' -61.9 NC_005259.1 + 53521 0.67 0.36331
Target:  5'- -uCGUGGCCa-GCgGCaCgGGCUCGGUg -3'
miRNA:   3'- ucGCACUGGaaCGgCG-GgCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 36602 0.68 0.355263
Target:  5'- cGCGUacguaaacgcGAcCCUUGCCGCCCGcGCcgcccgcaaGGCc -3'
miRNA:   3'- uCGCA----------CU-GGAACGGCGGGC-CGag-------CCG- -5'
23271 5' -61.9 NC_005259.1 + 67745 0.68 0.355263
Target:  5'- cGGCGgccACUagGCCGcCCCGGCcacCGGCc -3'
miRNA:   3'- -UCGCac-UGGaaCGGC-GGGCCGa--GCCG- -5'
23271 5' -61.9 NC_005259.1 + 63575 0.68 0.344991
Target:  5'- gAGCGgGAUauacGCCGCCUGGCUguucucguccuccaUGGCg -3'
miRNA:   3'- -UCGCaCUGgaa-CGGCGGGCCGA--------------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 56903 0.68 0.339548
Target:  5'- cAGCGUGGCC--GCCGCagcaGGCgugcccgcgUCGGUg -3'
miRNA:   3'- -UCGCACUGGaaCGGCGgg--CCG---------AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 32177 0.68 0.331882
Target:  5'- cGCGUGAgCUcGCUGCgCGcCUCGGUc -3'
miRNA:   3'- uCGCACUgGAaCGGCGgGCcGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 34352 0.68 0.331882
Target:  5'- cGaCGUGACCca-CCGCCgGuaUCGGCg -3'
miRNA:   3'- uC-GCACUGGaacGGCGGgCcgAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 31245 0.68 0.307493
Target:  5'- gGGCGcGGCggUGCCGCCCcacacgccgcaguaGGCggUGGCg -3'
miRNA:   3'- -UCGCaCUGgaACGGCGGG--------------CCGa-GCCG- -5'
23271 5' -61.9 NC_005259.1 + 12503 0.69 0.295473
Target:  5'- aGGCGUaGCCgcuggGCCGCUCGGCUacccguagagcCGaGCg -3'
miRNA:   3'- -UCGCAcUGGaa---CGGCGGGCCGA-----------GC-CG- -5'
23271 5' -61.9 NC_005259.1 + 60142 0.69 0.294778
Target:  5'- uGCGcGGCCUUgGCCGCCgccucagCGGCcucacgggCGGCg -3'
miRNA:   3'- uCGCaCUGGAA-CGGCGG-------GCCGa-------GCCG- -5'
23271 5' -61.9 NC_005259.1 + 35183 0.69 0.288575
Target:  5'- uGGCGUGccggugagcagcACCgUGCCGCCUGaggCGGCg -3'
miRNA:   3'- -UCGCAC------------UGGaACGGCGGGCcgaGCCG- -5'
23271 5' -61.9 NC_005259.1 + 41213 0.69 0.281805
Target:  5'- cGGUGUgGAUCgucaCGCCCuGCUCGGCg -3'
miRNA:   3'- -UCGCA-CUGGaacgGCGGGcCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 8859 0.69 0.281805
Target:  5'- cAGCGUGcccgccGCCUgccgcacccacGCCGCCUGagcgucacGCUCGGCc -3'
miRNA:   3'- -UCGCAC------UGGAa----------CGGCGGGC--------CGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 17333 0.69 0.268642
Target:  5'- gGGUGUG-CCggucaacGUCGCCgucgaggucggCGGCUCGGCg -3'
miRNA:   3'- -UCGCACuGGaa-----CGGCGG-----------GCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 61053 0.7 0.262249
Target:  5'- gGGCGgcucACCUUG-UGCCgGGCaUCGGCa -3'
miRNA:   3'- -UCGCac--UGGAACgGCGGgCCG-AGCCG- -5'
23271 5' -61.9 NC_005259.1 + 7908 0.7 0.262249
Target:  5'- uAGCGcaccACCUUGCCGCCCuuGGuCUCgugGGCc -3'
miRNA:   3'- -UCGCac--UGGAACGGCGGG--CC-GAG---CCG- -5'
23271 5' -61.9 NC_005259.1 + 23615 0.7 0.262249
Target:  5'- cGCGUGGCg--GCaGCCagaCGGCUCGGUg -3'
miRNA:   3'- uCGCACUGgaaCGgCGG---GCCGAGCCG- -5'
23271 5' -61.9 NC_005259.1 + 51824 0.7 0.249834
Target:  5'- gGGCG-GGCagacCCGCCCGGUugaUCGGCc -3'
miRNA:   3'- -UCGCaCUGgaacGGCGGGCCG---AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.