miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 5' -55 NC_005259.1 + 2949 0.7 0.571799
Target:  5'- gGCGcG-CGAGaCCCUGGCCAccGCGcGCGAa -3'
miRNA:   3'- aCGC-CaGCUU-GGGACUGGU--UGC-UGCU- -5'
23272 5' -55 NC_005259.1 + 4119 0.68 0.668393
Target:  5'- gGCGGccUCGAcgugGCCaaGACCGuCGGCGAg -3'
miRNA:   3'- aCGCC--AGCU----UGGgaCUGGUuGCUGCU- -5'
23272 5' -55 NC_005259.1 + 6210 0.71 0.516294
Target:  5'- aGCGGggUGAgccgccgcgccgacACCgUGACCGugGGCGAg -3'
miRNA:   3'- aCGCCa-GCU--------------UGGgACUGGUugCUGCU- -5'
23272 5' -55 NC_005259.1 + 7214 0.67 0.742005
Target:  5'- cUGCGGU-GGAUCUgcgUGAUgAACGACGGc -3'
miRNA:   3'- -ACGCCAgCUUGGG---ACUGgUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 8758 0.74 0.367886
Target:  5'- --aGGUCGAgGCCCuUGGCCAgcGCGGCGGu -3'
miRNA:   3'- acgCCAGCU-UGGG-ACUGGU--UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 8960 0.66 0.818645
Target:  5'- cGUGGaCGGGCaCCgUGccgggacguagguGCCAGCGGCGAc -3'
miRNA:   3'- aCGCCaGCUUG-GG-AC-------------UGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 9833 0.68 0.721344
Target:  5'- gUGCGG-CGcuGGCCCaaucgacauUGACCAgacgcgggaacGCGACGAu -3'
miRNA:   3'- -ACGCCaGC--UUGGG---------ACUGGU-----------UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 12178 0.71 0.540152
Target:  5'- -uCGGUCGAACCUgccgGACCGugGuCGu -3'
miRNA:   3'- acGCCAGCUUGGGa---CUGGUugCuGCu -5'
23272 5' -55 NC_005259.1 + 15644 0.7 0.571799
Target:  5'- cGCccGUCcGAUCCUGugCGACGACGGc -3'
miRNA:   3'- aCGc-CAGcUUGGGACugGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 18210 0.7 0.60387
Target:  5'- aGCaGGUCG-ACCCcGAUCAcGCGAUGAc -3'
miRNA:   3'- aCG-CCAGCuUGGGaCUGGU-UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 18466 0.67 0.772173
Target:  5'- cGcCGGUCcuGAGCCgUGcCCGACGcCGAc -3'
miRNA:   3'- aC-GCCAG--CUUGGgACuGGUUGCuGCU- -5'
23272 5' -55 NC_005259.1 + 21009 0.72 0.439943
Target:  5'- gGCGG-CG-ACCCUGACCGGCagcugaccGAUGAc -3'
miRNA:   3'- aCGCCaGCuUGGGACUGGUUG--------CUGCU- -5'
23272 5' -55 NC_005259.1 + 23640 0.7 0.60387
Target:  5'- gUGUGGUUucGGCCC--GCCGACGGCGAc -3'
miRNA:   3'- -ACGCCAGc-UUGGGacUGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 26445 0.73 0.430499
Target:  5'- aGCGGgCGGGCCggugGGCCGAUGugGAa -3'
miRNA:   3'- aCGCCaGCUUGGga--CUGGUUGCugCU- -5'
23272 5' -55 NC_005259.1 + 29028 1.09 0.001567
Target:  5'- cUGCGGUCGAACCCUGACCAACGACGAg -3'
miRNA:   3'- -ACGCCAGCUUGGGACUGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 30287 0.67 0.772173
Target:  5'- aGC-GUCGAGCUCuacggUGGCCcauuaGACGGCGAg -3'
miRNA:   3'- aCGcCAGCUUGGG-----ACUGG-----UUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 33305 0.66 0.801097
Target:  5'- cUGCGGcUCGAuCCC--GCCGuCGGCGGu -3'
miRNA:   3'- -ACGCC-AGCUuGGGacUGGUuGCUGCU- -5'
23272 5' -55 NC_005259.1 + 33903 0.66 0.791611
Target:  5'- cGCGcGaCGGGCCgaGACCGGCcACGGu -3'
miRNA:   3'- aCGC-CaGCUUGGgaCUGGUUGcUGCU- -5'
23272 5' -55 NC_005259.1 + 35281 0.66 0.801097
Target:  5'- cGgGGUCGccgauguGCCCcuugaaguagaUGACCGAgGGCGGu -3'
miRNA:   3'- aCgCCAGCu------UGGG-----------ACUGGUUgCUGCU- -5'
23272 5' -55 NC_005259.1 + 35593 0.66 0.81955
Target:  5'- aGCugaGGUCGggUgcguCCUGGCCAcgcuGCGuCGAg -3'
miRNA:   3'- aCG---CCAGCuuG----GGACUGGU----UGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.