miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23272 5' -55 NC_005259.1 + 64236 0.65 0.828499
Target:  5'- cGgGGUCGAuaGCCgacggGAUCAACGugGu -3'
miRNA:   3'- aCgCCAGCU--UGGga---CUGGUUGCugCu -5'
23272 5' -55 NC_005259.1 + 15644 0.7 0.571799
Target:  5'- cGCccGUCcGAUCCUGugCGACGACGGc -3'
miRNA:   3'- aCGc-CAGcUUGGGACugGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 23640 0.7 0.60387
Target:  5'- gUGUGGUUucGGCCC--GCCGACGGCGAc -3'
miRNA:   3'- -ACGCCAGc-UUGGGacUGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 18210 0.7 0.60387
Target:  5'- aGCaGGUCG-ACCCcGAUCAcGCGAUGAc -3'
miRNA:   3'- aCG-CCAGCuUGGGaCUGGU-UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 44277 0.69 0.62538
Target:  5'- --aGGcCGAacGCCUUGGCCAGCG-CGAg -3'
miRNA:   3'- acgCCaGCU--UGGGACUGGUUGCuGCU- -5'
23272 5' -55 NC_005259.1 + 47923 0.69 0.657664
Target:  5'- gGC-GUCGccgaGGCCCUGgaaGCCGAUGACGGc -3'
miRNA:   3'- aCGcCAGC----UUGGGAC---UGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 4119 0.68 0.668393
Target:  5'- gGCGGccUCGAcgugGCCaaGACCGuCGGCGAg -3'
miRNA:   3'- aCGCC--AGCU----UGGgaCUGGUuGCUGCU- -5'
23272 5' -55 NC_005259.1 + 36220 0.68 0.67909
Target:  5'- cGCGauGcCGAgcACCUUGGCCAGCG-CGAg -3'
miRNA:   3'- aCGC--CaGCU--UGGGACUGGUUGCuGCU- -5'
23272 5' -55 NC_005259.1 + 68559 0.68 0.689743
Target:  5'- gGUGGUUGAGCCa--ACCGAgGugGAc -3'
miRNA:   3'- aCGCCAGCUUGGgacUGGUUgCugCU- -5'
23272 5' -55 NC_005259.1 + 2949 0.7 0.571799
Target:  5'- gGCGcG-CGAGaCCCUGGCCAccGCGcGCGAa -3'
miRNA:   3'- aCGC-CaGCUU-GGGACUGGU--UGC-UGCU- -5'
23272 5' -55 NC_005259.1 + 41376 0.7 0.561193
Target:  5'- gUGCGGUCGAG-CUUGGCCGguacccAUGGCGc -3'
miRNA:   3'- -ACGCCAGCUUgGGACUGGU------UGCUGCu -5'
23272 5' -55 NC_005259.1 + 12178 0.71 0.540152
Target:  5'- -uCGGUCGAACCUgccgGACCGugGuCGu -3'
miRNA:   3'- acGCCAGCUUGGGa---CUGGUugCuGCu -5'
23272 5' -55 NC_005259.1 + 64831 0.74 0.351183
Target:  5'- gUGUGGUgaCGGACCCUG-CUGGCGAUGGc -3'
miRNA:   3'- -ACGCCA--GCUUGGGACuGGUUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 67220 0.74 0.351183
Target:  5'- cGgGGUCGAugCC-GACC-ACGGCGGu -3'
miRNA:   3'- aCgCCAGCUugGGaCUGGuUGCUGCU- -5'
23272 5' -55 NC_005259.1 + 8758 0.74 0.367886
Target:  5'- --aGGUCGAgGCCCuUGGCCAgcGCGGCGGu -3'
miRNA:   3'- acgCCAGCU-UGGG-ACUGGU--UGCUGCU- -5'
23272 5' -55 NC_005259.1 + 26445 0.73 0.430499
Target:  5'- aGCGGgCGGGCCggugGGCCGAUGugGAa -3'
miRNA:   3'- aCGCCaGCUUGGga--CUGGUUGCugCU- -5'
23272 5' -55 NC_005259.1 + 55344 0.72 0.439943
Target:  5'- aGCGGUggcgaugcCGAACgCCUGAgCGACGGCa- -3'
miRNA:   3'- aCGCCA--------GCUUG-GGACUgGUUGCUGcu -5'
23272 5' -55 NC_005259.1 + 21009 0.72 0.439943
Target:  5'- gGCGG-CG-ACCCUGACCGGCagcugaccGAUGAc -3'
miRNA:   3'- aCGCCaGCuUGGGACUGGUUG--------CUGCU- -5'
23272 5' -55 NC_005259.1 + 50241 0.72 0.488848
Target:  5'- cGCGGgcgCGGAUCgUGGCCAACGGg-- -3'
miRNA:   3'- aCGCCa--GCUUGGgACUGGUUGCUgcu -5'
23272 5' -55 NC_005259.1 + 6210 0.71 0.516294
Target:  5'- aGCGGggUGAgccgccgcgccgacACCgUGACCGugGGCGAg -3'
miRNA:   3'- aCGCCa-GCU--------------UGGgACUGGUugCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.