miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 4402 0.68 0.445485
Target:  5'- gACACCGaacuaCGAgGGCCGCCaccgcgcgccCGAGGUCg -3'
miRNA:   3'- -UGUGGCg----GCU-CCGGCGGca--------GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 46925 0.68 0.43613
Target:  5'- uGCGCCGCCGAGcuugcccgccgcGCCGCCGa------- -3'
miRNA:   3'- -UGUGGCGGCUC------------CGGCGGCaguucuag -5'
23274 3' -59.2 NC_005259.1 + 46078 0.68 0.43613
Target:  5'- aGCACCGCCGGGGCgagcggUGCC-UCAAccacGAUg -3'
miRNA:   3'- -UGUGGCGGCUCCG------GCGGcAGUU----CUAg -5'
23274 3' -59.2 NC_005259.1 + 12554 0.68 0.43613
Target:  5'- gGCAUUGCCGGGGUgGCcCGcCA-GAUCc -3'
miRNA:   3'- -UGUGGCGGCUCCGgCG-GCaGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7023 0.68 0.426889
Target:  5'- aACcCCGCCGAGcGCC-CCGgCGGGGUUu -3'
miRNA:   3'- -UGuGGCGGCUC-CGGcGGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7777 0.68 0.426889
Target:  5'- aACcCCGCCGAGcGCC-CCGgCGGGGUUu -3'
miRNA:   3'- -UGuGGCGGCUC-CGGcGGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 22221 0.68 0.417765
Target:  5'- cGCACCGCCgcGAGGCUGUCGguuuccGUCg -3'
miRNA:   3'- -UGUGGCGG--CUCCGGCGGCaguuc-UAG- -5'
23274 3' -59.2 NC_005259.1 + 27076 0.68 0.415051
Target:  5'- gACAUCGCCGAcauucugcggcGGCUGCCaugcggugggcuguGUCAugcGGAUCu -3'
miRNA:   3'- -UGUGGCGGCU-----------CCGGCGG--------------CAGU---UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 43825 0.69 0.408761
Target:  5'- gUACCGCCGgacacaGGGCCGCCGcUCGccaugccgAGcgCa -3'
miRNA:   3'- uGUGGCGGC------UCCGGCGGC-AGU--------UCuaG- -5'
23274 3' -59.2 NC_005259.1 + 15297 0.69 0.399879
Target:  5'- uACACCGCCGAccucGCCGCC--CAcGGUCu -3'
miRNA:   3'- -UGUGGCGGCUc---CGGCGGcaGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 9681 0.69 0.399879
Target:  5'- uGCGCUGCCggucGAGGUCGCCGcUCAcuGGGc- -3'
miRNA:   3'- -UGUGGCGG----CUCCGGCGGC-AGU--UCUag -5'
23274 3' -59.2 NC_005259.1 + 45733 0.69 0.399879
Target:  5'- cGCACCaCCGAGGCCGCgcacCGccUCGGGGa- -3'
miRNA:   3'- -UGUGGcGGCUCCGGCG----GC--AGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 16710 0.69 0.397238
Target:  5'- -gACCGCCGAgcaGGUCGCgcucugccucgccaCGcUCAAGAUCg -3'
miRNA:   3'- ugUGGCGGCU---CCGGCG--------------GC-AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 19443 0.69 0.391121
Target:  5'- uCGCC-CCGAGGCUGUCaUCGAGAc- -3'
miRNA:   3'- uGUGGcGGCUCCGGCGGcAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 56375 0.69 0.391121
Target:  5'- -aGCCGUCGcGGGCCGC-GUCGGcuGAUCg -3'
miRNA:   3'- ugUGGCGGC-UCCGGCGgCAGUU--CUAG- -5'
23274 3' -59.2 NC_005259.1 + 31411 0.69 0.382489
Target:  5'- aGCGCC-CCGAGGUCGCCGcUGAGcaacUCg -3'
miRNA:   3'- -UGUGGcGGCUCCGGCGGCaGUUCu---AG- -5'
23274 3' -59.2 NC_005259.1 + 16167 0.69 0.382489
Target:  5'- cCACUcCCGuGGCCGCCGagguccaaGAGAUCa -3'
miRNA:   3'- uGUGGcGGCuCCGGCGGCag------UUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 646 0.69 0.373985
Target:  5'- cCACCGCCGAGGaCGUgcUCGAGggCa -3'
miRNA:   3'- uGUGGCGGCUCCgGCGgcAGUUCuaG- -5'
23274 3' -59.2 NC_005259.1 + 37255 0.69 0.373985
Target:  5'- -uGCCGCCguugccaggcuuGAGGCCGCCcggCAGGAc- -3'
miRNA:   3'- ugUGGCGG------------CUCCGGCGGca-GUUCUag -5'
23274 3' -59.2 NC_005259.1 + 22610 0.69 0.36561
Target:  5'- cACGCCGCCGA--CCGCCGcCc-GAUCa -3'
miRNA:   3'- -UGUGGCGGCUccGGCGGCaGuuCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.