miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 7637 0.67 0.522987
Target:  5'- uACACCgucGCCGAGuucgaccGCCGUCGUCGuGAg- -3'
miRNA:   3'- -UGUGG---CGGCUC-------CGGCGGCAGUuCUag -5'
23274 3' -59.2 NC_005259.1 + 58700 0.67 0.513872
Target:  5'- -gGCuCGUCGccGCCGCCGUCAccAUCg -3'
miRNA:   3'- ugUG-GCGGCucCGGCGGCAGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 66014 0.67 0.513872
Target:  5'- cGCACCcUCGGGGCCGCaCGUguugcgcgCGAGcUCg -3'
miRNA:   3'- -UGUGGcGGCUCCGGCG-GCA--------GUUCuAG- -5'
23274 3' -59.2 NC_005259.1 + 51134 0.67 0.503821
Target:  5'- uCACCGUCGGGGCgGCCaugagcgcGUUcGGGUUg -3'
miRNA:   3'- uGUGGCGGCUCCGgCGG--------CAGuUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 60277 0.67 0.503821
Target:  5'- aGCGCUGCCG-GGCgGCCaUCGucGUCg -3'
miRNA:   3'- -UGUGGCGGCuCCGgCGGcAGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 8310 0.67 0.503821
Target:  5'- aACGCCGCCuugucGGaGCUGCCGaCGGcGAUCa -3'
miRNA:   3'- -UGUGGCGGc----UC-CGGCGGCaGUU-CUAG- -5'
23274 3' -59.2 NC_005259.1 + 2787 0.67 0.503821
Target:  5'- cGCACC-UCGAcuGGUCGCaCGUCAaccGGAUCu -3'
miRNA:   3'- -UGUGGcGGCU--CCGGCG-GCAGU---UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 66056 0.67 0.503821
Target:  5'- gACGCCGCCGuGGGCCuGCUGUa------ -3'
miRNA:   3'- -UGUGGCGGC-UCCGG-CGGCAguucuag -5'
23274 3' -59.2 NC_005259.1 + 16807 0.67 0.493856
Target:  5'- uACAUCGCgcuCGGGGCCGggGUCAuGAUCc -3'
miRNA:   3'- -UGUGGCG---GCUCCGGCggCAGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 45520 0.67 0.493856
Target:  5'- cGCGCCGgUGuuGGCCGCCGUgGcugcgagcGGGUUg -3'
miRNA:   3'- -UGUGGCgGCu-CCGGCGGCAgU--------UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 35862 0.67 0.483982
Target:  5'- cCGCCGCCGcGuccaccgcaGCCGCCGcCGAGGc- -3'
miRNA:   3'- uGUGGCGGCuC---------CGGCGGCaGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 36136 0.67 0.483982
Target:  5'- -gGCCGCCG-GGCUGuCCGUCGc---- -3'
miRNA:   3'- ugUGGCGGCuCCGGC-GGCAGUucuag -5'
23274 3' -59.2 NC_005259.1 + 36008 0.67 0.483982
Target:  5'- gACugCaCCGAGGUgGCCaG-CGAGGUCg -3'
miRNA:   3'- -UGugGcGGCUCCGgCGG-CaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 35573 0.67 0.483982
Target:  5'- -gACCGCCGAGaucCCGuuGUagcuGAGGUCg -3'
miRNA:   3'- ugUGGCGGCUCc--GGCggCAg---UUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 48182 0.67 0.474204
Target:  5'- cCGCCGCCGggugucggaccGGGCaUGCCGUCGuaguGGUa -3'
miRNA:   3'- uGUGGCGGC-----------UCCG-GCGGCAGUu---CUAg -5'
23274 3' -59.2 NC_005259.1 + 10083 0.67 0.474204
Target:  5'- gACGCCGacgaguagaccCCGAGGCCaCCGagcUCAAGAc- -3'
miRNA:   3'- -UGUGGC-----------GGCUCCGGcGGC---AGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 64681 0.68 0.454952
Target:  5'- aGCACCGCCGc-GCCGCCGagCGAu--- -3'
miRNA:   3'- -UGUGGCGGCucCGGCGGCa-GUUcuag -5'
23274 3' -59.2 NC_005259.1 + 24349 0.68 0.454952
Target:  5'- cUACCGCCGGGuGCuCGCacacCGAGGUCu -3'
miRNA:   3'- uGUGGCGGCUC-CG-GCGgca-GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 53583 0.68 0.454952
Target:  5'- aACACCG-UGAGGUguuccuuuuUGCuCGUCGGGGUCa -3'
miRNA:   3'- -UGUGGCgGCUCCG---------GCG-GCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 45010 0.68 0.454
Target:  5'- -gACCGCCGGGGCCgcGCCGcccugcuUCAuGAg- -3'
miRNA:   3'- ugUGGCGGCUCCGG--CGGC-------AGUuCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.