miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 9681 0.69 0.399879
Target:  5'- uGCGCUGCCggucGAGGUCGCCGcUCAcuGGGc- -3'
miRNA:   3'- -UGUGGCGG----CUCCGGCGGC-AGU--UCUag -5'
23274 3' -59.2 NC_005259.1 + 10083 0.67 0.474204
Target:  5'- gACGCCGacgaguagaccCCGAGGCCaCCGagcUCAAGAc- -3'
miRNA:   3'- -UGUGGC-----------GGCUCCGGcGGC---AGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 11011 0.66 0.585112
Target:  5'- cGCGCCggacgcGCCGAGGCaggaguuCGCCGggu-GGUCa -3'
miRNA:   3'- -UGUGG------CGGCUCCG-------GCGGCaguuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 12554 0.68 0.43613
Target:  5'- gGCAUUGCCGGGGUgGCcCGcCA-GAUCc -3'
miRNA:   3'- -UGUGGCGGCUCCGgCG-GCaGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 13428 0.73 0.209225
Target:  5'- uCGCCGCCGGGGCCGCgcuaggcgugacCGUC-GGcgCg -3'
miRNA:   3'- uGUGGCGGCUCCGGCG------------GCAGuUCuaG- -5'
23274 3' -59.2 NC_005259.1 + 14327 0.74 0.188778
Target:  5'- gACGCCGCCGcccgcgugcGGGCCGCCGaCGccAUCa -3'
miRNA:   3'- -UGUGGCGGC---------UCCGGCGGCaGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 14874 0.73 0.214627
Target:  5'- cGCGCUGcCCGAGccGCCGCCGUau-GGUCa -3'
miRNA:   3'- -UGUGGC-GGCUC--CGGCGGCAguuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 15297 0.69 0.399879
Target:  5'- uACACCGCCGAccucGCCGCC--CAcGGUCu -3'
miRNA:   3'- -UGUGGCGGCUc---CGGCGGcaGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 15996 0.66 0.553791
Target:  5'- uCACCGCCGGuGGCCgcauccuGCCGguugaCGAGGg- -3'
miRNA:   3'- uGUGGCGGCU-CCGG-------CGGCa----GUUCUag -5'
23274 3' -59.2 NC_005259.1 + 16167 0.69 0.382489
Target:  5'- cCACUcCCGuGGCCGCCGagguccaaGAGAUCa -3'
miRNA:   3'- uGUGGcGGCuCCGGCGGCag------UUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 16467 0.71 0.289132
Target:  5'- uACcCCGCCGcAGaUCGCCGUCAAGggCg -3'
miRNA:   3'- -UGuGGCGGC-UCcGGCGGCAGUUCuaG- -5'
23274 3' -59.2 NC_005259.1 + 16710 0.69 0.397238
Target:  5'- -gACCGCCGAgcaGGUCGCgcucugccucgccaCGcUCAAGAUCg -3'
miRNA:   3'- ugUGGCGGCU---CCGGCG--------------GC-AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 16807 0.67 0.493856
Target:  5'- uACAUCGCgcuCGGGGCCGggGUCAuGAUCc -3'
miRNA:   3'- -UGUGGCG---GCUCCGGCggCAGUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 17313 0.75 0.158876
Target:  5'- uACGCCGagcgguaccCCGAGGgugugccggucaacgUCGCCGUCGAGGUCg -3'
miRNA:   3'- -UGUGGC---------GGCUCC---------------GGCGGCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 17984 0.67 0.524003
Target:  5'- gGCugCGCauuGGGCCGCUacacCGAGGUCa -3'
miRNA:   3'- -UGugGCGgc-UCCGGCGGca--GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 19443 0.69 0.391121
Target:  5'- uCGCC-CCGAGGCUGUCaUCGAGAc- -3'
miRNA:   3'- uGUGGcGGCUCCGGCGGcAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 19532 0.66 0.538314
Target:  5'- uCACCGCCGugcAGGCCGaCgcguaugcccgcagcCGUCGGGAc- -3'
miRNA:   3'- uGUGGCGGC---UCCGGC-G---------------GCAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 19654 0.72 0.241638
Target:  5'- gGCACCGCCucGGGcaGCCGCUacauccccggucagGUCGGGAUCg -3'
miRNA:   3'- -UGUGGCGG--CUC--CGGCGG--------------CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 20111 0.71 0.282901
Target:  5'- -aGCCGCCGucucaaggccgcacuGGCUGCCGUCGcGAUg -3'
miRNA:   3'- ugUGGCGGCu--------------CCGGCGGCAGUuCUAg -5'
23274 3' -59.2 NC_005259.1 + 21292 0.66 0.569399
Target:  5'- -gGCCGauGAGGCCgaacgggagaccuauGCCcguGUCAAGAUCc -3'
miRNA:   3'- ugUGGCggCUCCGG---------------CGG---CAGUUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.