miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 42943 0.74 0.183471
Target:  5'- uCGCCGUgggCGAGGCCGCCGUugucgaaCGGGAUg -3'
miRNA:   3'- uGUGGCG---GCUCCGGCGGCA-------GUUCUAg -5'
23274 3' -59.2 NC_005259.1 + 8687 0.74 0.183948
Target:  5'- -gGCCGCCucGAuGUCGCUGUCGAGGUCg -3'
miRNA:   3'- ugUGGCGG--CUcCGGCGGCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 45401 0.74 0.187317
Target:  5'- uCGCCGCCGAgcgcgcugauGGCCGCCGcCGcugccucguaggccGGAUCu -3'
miRNA:   3'- uGUGGCGGCU----------CCGGCGGCaGU--------------UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 14327 0.74 0.188778
Target:  5'- gACGCCGCCGcccgcgugcGGGCCGCCGaCGccAUCa -3'
miRNA:   3'- -UGUGGCGGC---------UCCGGCGGCaGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 23355 0.74 0.193719
Target:  5'- -gGCUGCCugcGAGGCCGCCGaggCAuGGAUCg -3'
miRNA:   3'- ugUGGCGG---CUCCGGCGGCa--GU-UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 63168 0.73 0.209225
Target:  5'- -aGCCGCCGcAGcGCCGCCGagGuGAUCg -3'
miRNA:   3'- ugUGGCGGC-UC-CGGCGGCagUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 13428 0.73 0.209225
Target:  5'- uCGCCGCCGGGGCCGCgcuaggcgugacCGUC-GGcgCg -3'
miRNA:   3'- uGUGGCGGCUCCGGCG------------GCAGuUCuaG- -5'
23274 3' -59.2 NC_005259.1 + 14874 0.73 0.214627
Target:  5'- cGCGCUGcCCGAGccGCCGCCGUau-GGUCa -3'
miRNA:   3'- -UGUGGC-GGCUC--CGGCGGCAguuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7323 0.73 0.220149
Target:  5'- uCACCGCCGucGCCGaguaCGUCGAGGc- -3'
miRNA:   3'- uGUGGCGGCucCGGCg---GCAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 28960 0.73 0.22579
Target:  5'- cGCAUCGCCGAGGUCGgUGcCGAGGc- -3'
miRNA:   3'- -UGUGGCGGCUCCGGCgGCaGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 35520 0.72 0.237442
Target:  5'- cCGCCGCCGGGcacaccgcCCGCCGUCGccGAUCc -3'
miRNA:   3'- uGUGGCGGCUCc-------GGCGGCAGUu-CUAG- -5'
23274 3' -59.2 NC_005259.1 + 19654 0.72 0.241638
Target:  5'- gGCACCGCCucGGGcaGCCGCUacauccccggucagGUCGGGAUCg -3'
miRNA:   3'- -UGUGGCGG--CUC--CGGCGG--------------CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 36659 0.72 0.243455
Target:  5'- -aGCCGCCGcccucgccGCCGCCGcCGGGGUCu -3'
miRNA:   3'- ugUGGCGGCuc------CGGCGGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 37652 0.72 0.249593
Target:  5'- cGCACCGCCGccGCCGCCGgugccgcCAcGGUUg -3'
miRNA:   3'- -UGUGGCGGCucCGGCGGCa------GUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 51408 0.72 0.249593
Target:  5'- cACAUCGCCGAGGg-GCCgGUUGAGGUCu -3'
miRNA:   3'- -UGUGGCGGCUCCggCGG-CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 36439 0.72 0.255859
Target:  5'- aGCGUCGCCGAGGUCGaccgCGUCGAGGg- -3'
miRNA:   3'- -UGUGGCGGCUCCGGCg---GCAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 51487 0.72 0.262253
Target:  5'- cACACCGCCGGGGauaggucgaCGCCGcCGAucUCg -3'
miRNA:   3'- -UGUGGCGGCUCCg--------GCGGCaGUUcuAG- -5'
23274 3' -59.2 NC_005259.1 + 7127 0.72 0.262253
Target:  5'- aACACCaCCGccGCCGCCaagcucgaacucGUCAAGGUCg -3'
miRNA:   3'- -UGUGGcGGCucCGGCGG------------CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 34558 0.72 0.268777
Target:  5'- -uGCCGUCGGGGCCGaCGgCGAGGUUc -3'
miRNA:   3'- ugUGGCGGCUCCGGCgGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 2162 0.71 0.27543
Target:  5'- aGCGgCGUCGA-GCCGCCGguugcCGAGGUCa -3'
miRNA:   3'- -UGUgGCGGCUcCGGCGGCa----GUUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.