miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 28649 1.09 0.00051
Target:  5'- gACACCGCCGAGGCCGCCGUCAAGAUCa -3'
miRNA:   3'- -UGUGGCGGCUCCGGCGGCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 8053 0.84 0.037565
Target:  5'- gACACCGCCGGucGCCGCCGacaUCGAGAUCg -3'
miRNA:   3'- -UGUGGCGGCUc-CGGCGGC---AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 29360 0.82 0.054143
Target:  5'- cCGCCGUCGAGGCaC-CCGUCGAGGUCu -3'
miRNA:   3'- uGUGGCGGCUCCG-GcGGCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 22996 0.8 0.068434
Target:  5'- gACGCCGCCGAGGUCaCCGaggacggcucggucaUCGAGAUCg -3'
miRNA:   3'- -UGUGGCGGCUCCGGcGGC---------------AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 26067 0.79 0.084443
Target:  5'- cCGCCGCCGAgcagucccccgaGGCCGCCGcCGAGAa- -3'
miRNA:   3'- uGUGGCGGCU------------CCGGCGGCaGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 7580 0.78 0.10512
Target:  5'- cGCGCCGCCGccGCCGaCC-UCAAGGUCg -3'
miRNA:   3'- -UGUGGCGGCucCGGC-GGcAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 54730 0.78 0.10512
Target:  5'- gACAuaGCCGAGGCUGCCGaCAGcGAUCa -3'
miRNA:   3'- -UGUggCGGCUCCGGCGGCaGUU-CUAG- -5'
23274 3' -59.2 NC_005259.1 + 45344 0.77 0.114039
Target:  5'- uGCGCCGCCuGGGCCGCCG-CGuaGUCg -3'
miRNA:   3'- -UGUGGCGGcUCCGGCGGCaGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 48396 0.77 0.120373
Target:  5'- -uGCCGCCGAcGcCCGCCGUCGAG-UCa -3'
miRNA:   3'- ugUGGCGGCUcC-GGCGGCAGUUCuAG- -5'
23274 3' -59.2 NC_005259.1 + 53254 0.77 0.127033
Target:  5'- gACACCGUCGccGCCGCUGUCGccggugccgccaAGAUCg -3'
miRNA:   3'- -UGUGGCGGCucCGGCGGCAGU------------UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 5398 0.76 0.150696
Target:  5'- cCACCGUCGucaucacccgcgcuGGCCGCCacGUCGAGGUCu -3'
miRNA:   3'- uGUGGCGGCu-------------CCGGCGG--CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 2732 0.75 0.153109
Target:  5'- aACACCaccgauGCCGAGGUCGCCGUCGu---- -3'
miRNA:   3'- -UGUGG------CGGCUCCGGCGGCAGUucuag -5'
23274 3' -59.2 NC_005259.1 + 17313 0.75 0.158876
Target:  5'- uACGCCGagcgguaccCCGAGGgugugccggucaacgUCGCCGUCGAGGUCg -3'
miRNA:   3'- -UGUGGC---------GGCUCC---------------GGCGGCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 45304 0.75 0.161407
Target:  5'- cGCGCCggugacGCCGAGGCCGCCGcCGAa--- -3'
miRNA:   3'- -UGUGG------CGGCUCCGGCGGCaGUUcuag -5'
23274 3' -59.2 NC_005259.1 + 43029 0.75 0.163975
Target:  5'- gAUGCCGCCGAgcaGGCCGCCGagcagcgaaccgaCGGGGUCg -3'
miRNA:   3'- -UGUGGCGGCU---CCGGCGGCa------------GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 1867 0.75 0.165707
Target:  5'- cCGCCGCCGcguuccguaagcAGGCCGCCG---AGAUCg -3'
miRNA:   3'- uGUGGCGGC------------UCCGGCGGCaguUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 58195 0.74 0.174615
Target:  5'- -gACCGCCGuGGGCuUGCCGgugUCAGGGUCa -3'
miRNA:   3'- ugUGGCGGC-UCCG-GCGGC---AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 52034 0.74 0.174615
Target:  5'- cGCACUGCgCGcuGUCGCCGUCGAGgAUCg -3'
miRNA:   3'- -UGUGGCG-GCucCGGCGGCAGUUC-UAG- -5'
23274 3' -59.2 NC_005259.1 + 27502 0.74 0.176447
Target:  5'- cCACgCGCCGAGGUcgacguguccgcacaCGCCGUCGAGGc- -3'
miRNA:   3'- uGUG-GCGGCUCCG---------------GCGGCAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 39920 0.74 0.179228
Target:  5'- --uCCGUCGAgGGCCG-CGUCGAGGUCg -3'
miRNA:   3'- uguGGCGGCU-CCGGCgGCAGUUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.