Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23274 | 3' | -59.2 | NC_005259.1 | + | 47953 | 0.66 | 0.586163 |
Target: 5'- gGCGgUGCCGAuGGCCGCCG-CGc---- -3' miRNA: 3'- -UGUgGCGGCU-CCGGCGGCaGUucuag -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 17313 | 0.75 | 0.158876 |
Target: 5'- uACGCCGagcgguaccCCGAGGgugugccggucaacgUCGCCGUCGAGGUCg -3' miRNA: 3'- -UGUGGC---------GGCUCC---------------GGCGGCAGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 45304 | 0.75 | 0.161407 |
Target: 5'- cGCGCCggugacGCCGAGGCCGCCGcCGAa--- -3' miRNA: 3'- -UGUGG------CGGCUCCGGCGGCaGUUcuag -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 43029 | 0.75 | 0.163975 |
Target: 5'- gAUGCCGCCGAgcaGGCCGCCGagcagcgaaccgaCGGGGUCg -3' miRNA: 3'- -UGUGGCGGCU---CCGGCGGCa------------GUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 1867 | 0.75 | 0.165707 |
Target: 5'- cCGCCGCCGcguuccguaagcAGGCCGCCG---AGAUCg -3' miRNA: 3'- uGUGGCGGC------------UCCGGCGGCaguUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 52034 | 0.74 | 0.174615 |
Target: 5'- cGCACUGCgCGcuGUCGCCGUCGAGgAUCg -3' miRNA: 3'- -UGUGGCG-GCucCGGCGGCAGUUC-UAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 58195 | 0.74 | 0.174615 |
Target: 5'- -gACCGCCGuGGGCuUGCCGgugUCAGGGUCa -3' miRNA: 3'- ugUGGCGGC-UCCG-GCGGC---AGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 27502 | 0.74 | 0.176447 |
Target: 5'- cCACgCGCCGAGGUcgacguguccgcacaCGCCGUCGAGGc- -3' miRNA: 3'- uGUG-GCGGCUCCG---------------GCGGCAGUUCUag -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 39920 | 0.74 | 0.179228 |
Target: 5'- --uCCGUCGAgGGCCG-CGUCGAGGUCg -3' miRNA: 3'- uguGGCGGCU-CCGGCgGCAGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 2732 | 0.75 | 0.153109 |
Target: 5'- aACACCaccgauGCCGAGGUCGCCGUCGu---- -3' miRNA: 3'- -UGUGG------CGGCUCCGGCGGCAGUucuag -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 5398 | 0.76 | 0.150696 |
Target: 5'- cCACCGUCGucaucacccgcgcuGGCCGCCacGUCGAGGUCu -3' miRNA: 3'- uGUGGCGGCu-------------CCGGCGG--CAGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 53254 | 0.77 | 0.127033 |
Target: 5'- gACACCGUCGccGCCGCUGUCGccggugccgccaAGAUCg -3' miRNA: 3'- -UGUGGCGGCucCGGCGGCAGU------------UCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 8053 | 0.84 | 0.037565 |
Target: 5'- gACACCGCCGGucGCCGCCGacaUCGAGAUCg -3' miRNA: 3'- -UGUGGCGGCUc-CGGCGGC---AGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 29360 | 0.82 | 0.054143 |
Target: 5'- cCGCCGUCGAGGCaC-CCGUCGAGGUCu -3' miRNA: 3'- uGUGGCGGCUCCG-GcGGCAGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 22996 | 0.8 | 0.068434 |
Target: 5'- gACGCCGCCGAGGUCaCCGaggacggcucggucaUCGAGAUCg -3' miRNA: 3'- -UGUGGCGGCUCCGGcGGC---------------AGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 26067 | 0.79 | 0.084443 |
Target: 5'- cCGCCGCCGAgcagucccccgaGGCCGCCGcCGAGAa- -3' miRNA: 3'- uGUGGCGGCU------------CCGGCGGCaGUUCUag -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 54730 | 0.78 | 0.10512 |
Target: 5'- gACAuaGCCGAGGCUGCCGaCAGcGAUCa -3' miRNA: 3'- -UGUggCGGCUCCGGCGGCaGUU-CUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 7580 | 0.78 | 0.10512 |
Target: 5'- cGCGCCGCCGccGCCGaCC-UCAAGGUCg -3' miRNA: 3'- -UGUGGCGGCucCGGC-GGcAGUUCUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 45344 | 0.77 | 0.114039 |
Target: 5'- uGCGCCGCCuGGGCCGCCG-CGuaGUCg -3' miRNA: 3'- -UGUGGCGGcUCCGGCGGCaGUucUAG- -5' |
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23274 | 3' | -59.2 | NC_005259.1 | + | 48396 | 0.77 | 0.120373 |
Target: 5'- -uGCCGCCGAcGcCCGCCGUCGAG-UCa -3' miRNA: 3'- ugUGGCGGCUcC-GGCGGCAGUUCuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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