miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 646 0.69 0.373985
Target:  5'- cCACCGCCGAGGaCGUgcUCGAGggCa -3'
miRNA:   3'- uGUGGCGGCUCCgGCGgcAGUUCuaG- -5'
23274 3' -59.2 NC_005259.1 + 1867 0.75 0.165707
Target:  5'- cCGCCGCCGcguuccguaagcAGGCCGCCG---AGAUCg -3'
miRNA:   3'- uGUGGCGGC------------UCCGGCGGCaguUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 2100 0.66 0.575673
Target:  5'- uCAUCGgCGAGGCCaauuggcacacGCuCGcCGAGGUCa -3'
miRNA:   3'- uGUGGCgGCUCCGG-----------CG-GCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 2162 0.71 0.27543
Target:  5'- aGCGgCGUCGA-GCCGCCGguugcCGAGGUCa -3'
miRNA:   3'- -UGUgGCGGCUcCGGCGGCa----GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 2732 0.75 0.153109
Target:  5'- aACACCaccgauGCCGAGGUCGCCGUCGu---- -3'
miRNA:   3'- -UGUGG------CGGCUCCGGCGGCAGUucuag -5'
23274 3' -59.2 NC_005259.1 + 2787 0.67 0.503821
Target:  5'- cGCACC-UCGAcuGGUCGCaCGUCAaccGGAUCu -3'
miRNA:   3'- -UGUGGcGGCU--CCGGCG-GCAGU---UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 3062 0.67 0.524003
Target:  5'- cUACCGUCGAcgGGCCgagGCCGaCAAGAg- -3'
miRNA:   3'- uGUGGCGGCU--CCGG---CGGCaGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 4402 0.68 0.445485
Target:  5'- gACACCGaacuaCGAgGGCCGCCaccgcgcgccCGAGGUCg -3'
miRNA:   3'- -UGUGGCg----GCU-CCGGCGGca--------GUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 4597 0.71 0.27543
Target:  5'- aACACCGCCauAGGCaCGCUGUCGGGc-- -3'
miRNA:   3'- -UGUGGCGGc-UCCG-GCGGCAGUUCuag -5'
23274 3' -59.2 NC_005259.1 + 5398 0.76 0.150696
Target:  5'- cCACCGUCGucaucacccgcgcuGGCCGCCacGUCGAGGUCu -3'
miRNA:   3'- uGUGGCGGCu-------------CCGGCGG--CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 6108 0.71 0.303362
Target:  5'- uCGCCgagGCCGAGGCCGCCGcuacgCGGGc-- -3'
miRNA:   3'- uGUGG---CGGCUCCGGCGGCa----GUUCuag -5'
23274 3' -59.2 NC_005259.1 + 7023 0.68 0.426889
Target:  5'- aACcCCGCCGAGcGCC-CCGgCGGGGUUu -3'
miRNA:   3'- -UGuGGCGGCUC-CGGcGGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7127 0.72 0.262253
Target:  5'- aACACCaCCGccGCCGCCaagcucgaacucGUCAAGGUCg -3'
miRNA:   3'- -UGUGGcGGCucCGGCGG------------CAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7323 0.73 0.220149
Target:  5'- uCACCGCCGucGCCGaguaCGUCGAGGc- -3'
miRNA:   3'- uGUGGCGGCucCGGCg---GCAGUUCUag -5'
23274 3' -59.2 NC_005259.1 + 7580 0.78 0.10512
Target:  5'- cGCGCCGCCGccGCCGaCC-UCAAGGUCg -3'
miRNA:   3'- -UGUGGCGGCucCGGC-GGcAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 7637 0.67 0.522987
Target:  5'- uACACCgucGCCGAGuucgaccGCCGUCGUCGuGAg- -3'
miRNA:   3'- -UGUGG---CGGCUC-------CGGCGGCAGUuCUag -5'
23274 3' -59.2 NC_005259.1 + 7777 0.68 0.426889
Target:  5'- aACcCCGCCGAGcGCC-CCGgCGGGGUUu -3'
miRNA:   3'- -UGuGGCGGCUC-CGGcGGCaGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 8053 0.84 0.037565
Target:  5'- gACACCGCCGGucGCCGCCGacaUCGAGAUCg -3'
miRNA:   3'- -UGUGGCGGCUc-CGGCGGC---AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 8310 0.67 0.503821
Target:  5'- aACGCCGCCuugucGGaGCUGCCGaCGGcGAUCa -3'
miRNA:   3'- -UGUGGCGGc----UC-CGGCGGCaGUU-CUAG- -5'
23274 3' -59.2 NC_005259.1 + 8687 0.74 0.183948
Target:  5'- -gGCCGCCucGAuGUCGCUGUCGAGGUCg -3'
miRNA:   3'- ugUGGCGG--CUcCGGCGGCAGUUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.