miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23274 3' -59.2 NC_005259.1 + 67176 0.66 0.585112
Target:  5'- cAUGCCGCCGAugaugcccGccucgucucccucGCCGCUGUCGgcgGGGUCg -3'
miRNA:   3'- -UGUGGCGGCU--------C-------------CGGCGGCAGU---UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 67141 0.7 0.341272
Target:  5'- aGCACCGCUGuGaGCCGCUuGUCGAuGGUg -3'
miRNA:   3'- -UGUGGCGGCuC-CGGCGG-CAGUU-CUAg -5'
23274 3' -59.2 NC_005259.1 + 66056 0.67 0.503821
Target:  5'- gACGCCGCCGuGGGCCuGCUGUa------ -3'
miRNA:   3'- -UGUGGCGGC-UCCGG-CGGCAguucuag -5'
23274 3' -59.2 NC_005259.1 + 66014 0.67 0.513872
Target:  5'- cGCACCcUCGGGGCCGCaCGUguugcgcgCGAGcUCg -3'
miRNA:   3'- -UGUGGcGGCUCCGGCG-GCA--------GUUCuAG- -5'
23274 3' -59.2 NC_005259.1 + 64681 0.68 0.454952
Target:  5'- aGCACCGCCGc-GCCGCCGagCGAu--- -3'
miRNA:   3'- -UGUGGCGGCucCGGCGGCa-GUUcuag -5'
23274 3' -59.2 NC_005259.1 + 63168 0.73 0.209225
Target:  5'- -aGCCGCCGcAGcGCCGCCGagGuGAUCg -3'
miRNA:   3'- ugUGGCGGC-UC-CGGCGGCagUuCUAG- -5'
23274 3' -59.2 NC_005259.1 + 60277 0.67 0.503821
Target:  5'- aGCGCUGCCG-GGCgGCCaUCGucGUCg -3'
miRNA:   3'- -UGUGGCGGCuCCGgCGGcAGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 60142 0.66 0.534211
Target:  5'- uGCGCgGCCuuGGCCGCCGccUCAGcGGccUCa -3'
miRNA:   3'- -UGUGgCGGcuCCGGCGGC--AGUU-CU--AG- -5'
23274 3' -59.2 NC_005259.1 + 58838 0.66 0.555865
Target:  5'- uCGCCGCCcucggucucacccucGGGCuCGCCGUCGucGUCg -3'
miRNA:   3'- uGUGGCGGc--------------UCCG-GCGGCAGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 58700 0.67 0.513872
Target:  5'- -gGCuCGUCGccGCCGCCGUCAccAUCg -3'
miRNA:   3'- ugUG-GCGGCucCGGCGGCAGUucUAG- -5'
23274 3' -59.2 NC_005259.1 + 58195 0.74 0.174615
Target:  5'- -gACCGCCGuGGGCuUGCCGgugUCAGGGUCa -3'
miRNA:   3'- ugUGGCGGC-UCCG-GCGGC---AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 57966 0.7 0.349253
Target:  5'- cCAUgGUCGAGGUCGCCG---GGAUCg -3'
miRNA:   3'- uGUGgCGGCUCCGGCGGCaguUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 56784 0.7 0.349253
Target:  5'- gACACCGCCGuuGCCGaugaacaGaUCGGGGUCg -3'
miRNA:   3'- -UGUGGCGGCucCGGCgg-----C-AGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 56375 0.69 0.391121
Target:  5'- -aGCCGUCGcGGGCCGC-GUCGGcuGAUCg -3'
miRNA:   3'- ugUGGCGGC-UCCGGCGgCAGUU--CUAG- -5'
23274 3' -59.2 NC_005259.1 + 54730 0.78 0.10512
Target:  5'- gACAuaGCCGAGGCUGCCGaCAGcGAUCa -3'
miRNA:   3'- -UGUggCGGCUCCGGCGGCaGUU-CUAG- -5'
23274 3' -59.2 NC_005259.1 + 53583 0.68 0.454952
Target:  5'- aACACCG-UGAGGUguuccuuuuUGCuCGUCGGGGUCa -3'
miRNA:   3'- -UGUGGCgGCUCCG---------GCG-GCAGUUCUAG- -5'
23274 3' -59.2 NC_005259.1 + 53254 0.77 0.127033
Target:  5'- gACACCGUCGccGCCGCUGUCGccggugccgccaAGAUCg -3'
miRNA:   3'- -UGUGGCGGCucCGGCGGCAGU------------UCUAG- -5'
23274 3' -59.2 NC_005259.1 + 52131 0.66 0.575673
Target:  5'- cGCACCGCCGuccGGCaccuCGCCGaggCAGGcagCg -3'
miRNA:   3'- -UGUGGCGGCu--CCG----GCGGCa--GUUCua-G- -5'
23274 3' -59.2 NC_005259.1 + 52034 0.74 0.174615
Target:  5'- cGCACUGCgCGcuGUCGCCGUCGAGgAUCg -3'
miRNA:   3'- -UGUGGCG-GCucCGGCGGCAGUUC-UAG- -5'
23274 3' -59.2 NC_005259.1 + 51487 0.72 0.262253
Target:  5'- cACACCGCCGGGGauaggucgaCGCCGcCGAucUCg -3'
miRNA:   3'- -UGUGGCGGCUCCg--------GCGGCaGUUcuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.