Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23275 | 3' | -57.6 | NC_005259.1 | + | 13405 | 0.66 | 0.680674 |
Target: 5'- uCGcUCGGCcuUCcugGCCGggGUcgccgccgGGGCCGCGc -3' miRNA: 3'- -GC-AGCCG--AGa--CGGCuaCA--------UCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 38781 | 0.66 | 0.676457 |
Target: 5'- uGUCGGCgaaaccgaaaccgCUGCCGAUG-AGaucgcCCGCGc -3' miRNA: 3'- gCAGCCGa------------GACGGCUACaUCc----GGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 61923 | 0.66 | 0.648916 |
Target: 5'- uCGUCGGCagcucggucUCUcgcGCgGGUGccgGGGCCACc -3' miRNA: 3'- -GCAGCCG---------AGA---CGgCUACa--UCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 19838 | 0.67 | 0.617027 |
Target: 5'- uCG-CGGCUgCUGCCGcgcucgGUGUGGcGCuCGCGc -3' miRNA: 3'- -GCaGCCGA-GACGGC------UACAUC-CG-GUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 2166 | 0.67 | 0.60641 |
Target: 5'- gCGUCGaGCcgccggUUGCCGAgGUcauGGGCCGCu -3' miRNA: 3'- -GCAGC-CGa-----GACGGCUaCA---UCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 55807 | 0.67 | 0.585247 |
Target: 5'- cCGaCGGCUCacccUCGggGUAGGCCGCc -3' miRNA: 3'- -GCaGCCGAGac--GGCuaCAUCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 57021 | 0.68 | 0.564229 |
Target: 5'- gCG-CGGCUCgGCgCGGUG-GGGUCGCa -3' miRNA: 3'- -GCaGCCGAGaCG-GCUACaUCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 47951 | 0.68 | 0.553794 |
Target: 5'- --aCGGCggUGCCGAUGgccGCCGCGc -3' miRNA: 3'- gcaGCCGagACGGCUACaucCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 60762 | 0.68 | 0.512696 |
Target: 5'- aGUCGGCUCgGCgaGGU-UGGGCUGCGc -3' miRNA: 3'- gCAGCCGAGaCGg-CUAcAUCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 48482 | 0.69 | 0.502613 |
Target: 5'- gCGUCGGC-CUGUuccuCGAcgcgcuUGaGGGCCGCGa -3' miRNA: 3'- -GCAGCCGaGACG----GCU------ACaUCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 58200 | 0.69 | 0.492617 |
Target: 5'- cCGUgGGCU-UGCCGGUGUcaGGGUCAg- -3' miRNA: 3'- -GCAgCCGAgACGGCUACA--UCCGGUgc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 14656 | 0.69 | 0.492617 |
Target: 5'- gCGUgGGCUCaGcCCGAcucGGGCCGCGu -3' miRNA: 3'- -GCAgCCGAGaC-GGCUacaUCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 9728 | 0.7 | 0.434736 |
Target: 5'- gGUCGaGCUC-GCCGAUGUuccGGUCAUc -3' miRNA: 3'- gCAGC-CGAGaCGGCUACAu--CCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 27823 | 0.7 | 0.407308 |
Target: 5'- --cUGGCucgacuUCUGCgCGAgGUAGGCCGCGa -3' miRNA: 3'- gcaGCCG------AGACG-GCUaCAUCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 8901 | 0.71 | 0.38099 |
Target: 5'- aCGcUCGGC-CUGCUGAc--GGGCCGCGu -3' miRNA: 3'- -GC-AGCCGaGACGGCUacaUCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 21274 | 0.72 | 0.34771 |
Target: 5'- uCGUCGGC-CUgacgagcagGCCGAUG-AGGCCgaACGg -3' miRNA: 3'- -GCAGCCGaGA---------CGGCUACaUCCGG--UGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 45138 | 0.73 | 0.294609 |
Target: 5'- gGUCGGCaaUCUGCUGAUcgcucAGGCCGCc -3' miRNA: 3'- gCAGCCG--AGACGGCUAca---UCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 40446 | 0.74 | 0.244348 |
Target: 5'- uGUgUGGC-CUGCCGGUGUgguugacguacugccGGGCCGCGc -3' miRNA: 3'- gCA-GCCGaGACGGCUACA---------------UCCGGUGC- -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 11412 | 0.76 | 0.186847 |
Target: 5'- -uUCGGCUCgugGCCGGUGcaacggggaugcuUGGGCCGCu -3' miRNA: 3'- gcAGCCGAGa--CGGCUAC-------------AUCCGGUGc -5' |
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23275 | 3' | -57.6 | NC_005259.1 | + | 28276 | 1.1 | 0.000761 |
Target: 5'- cCGUCGGCUCUGCCGAUGUAGGCCACGg -3' miRNA: 3'- -GCAGCCGAGACGGCUACAUCCGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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