miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23275 5' -56.7 NC_005259.1 + 31511 0.66 0.691113
Target:  5'- cGCGCcggacuuGCuu-GAUCGGggugGUGCCGUg -3'
miRNA:   3'- aCGCGu------CGcauCUAGCCa---CACGGCAg -5'
23275 5' -56.7 NC_005259.1 + 61495 0.66 0.691113
Target:  5'- cGCGaccguugaGGCGc---UCGGUGUGCCGgUCg -3'
miRNA:   3'- aCGCg-------UCGCaucuAGCCACACGGC-AG- -5'
23275 5' -56.7 NC_005259.1 + 38232 0.66 0.669698
Target:  5'- --aGUAGCGUGGAUCaGcgaugGUGCCGcCu -3'
miRNA:   3'- acgCGUCGCAUCUAGcCa----CACGGCaG- -5'
23275 5' -56.7 NC_005259.1 + 54067 0.66 0.658934
Target:  5'- aGCGUuguccuGCGUgAGGUCGGUG-G-CGUCg -3'
miRNA:   3'- aCGCGu-----CGCA-UCUAGCCACaCgGCAG- -5'
23275 5' -56.7 NC_005259.1 + 8953 0.67 0.594184
Target:  5'- gGCGCGcCGUGGA-CGGgcaccGUGCCGg- -3'
miRNA:   3'- aCGCGUcGCAUCUaGCCa----CACGGCag -5'
23275 5' -56.7 NC_005259.1 + 28750 0.68 0.58345
Target:  5'- cGCGCccgAGCGUgAGAUCGucgccgGUGCCGa- -3'
miRNA:   3'- aCGCG---UCGCA-UCUAGCca----CACGGCag -5'
23275 5' -56.7 NC_005259.1 + 29954 0.68 0.572755
Target:  5'- gGuCGCGGCugGUGGggCGGgcgGUGaCCGUCc -3'
miRNA:   3'- aC-GCGUCG--CAUCuaGCCa--CAC-GGCAG- -5'
23275 5' -56.7 NC_005259.1 + 11326 0.68 0.562106
Target:  5'- cGCGCAGCucgucGUCGGUcaUGCCGUUg -3'
miRNA:   3'- aCGCGUCGcauc-UAGCCAc-ACGGCAG- -5'
23275 5' -56.7 NC_005259.1 + 64028 0.68 0.545185
Target:  5'- gGCGCGGCG-AGGcCGGUGaccggaucuuucucuUGCCGg- -3'
miRNA:   3'- aCGCGUCGCaUCUaGCCAC---------------ACGGCag -5'
23275 5' -56.7 NC_005259.1 + 60581 0.69 0.520126
Target:  5'- gGCGgcccaCGGCG-AG-UCGG-GUGCCGUCa -3'
miRNA:   3'- aCGC-----GUCGCaUCuAGCCaCACGGCAG- -5'
23275 5' -56.7 NC_005259.1 + 14090 0.7 0.440359
Target:  5'- gUGCGCAGCG-AGGUCGaGgGUGCgGa- -3'
miRNA:   3'- -ACGCGUCGCaUCUAGC-CaCACGgCag -5'
23275 5' -56.7 NC_005259.1 + 58332 0.71 0.376603
Target:  5'- cGgGCAGCGagaucAGGUCGGUGgccucggGCaCGUCg -3'
miRNA:   3'- aCgCGUCGCa----UCUAGCCACa------CG-GCAG- -5'
23275 5' -56.7 NC_005259.1 + 56198 0.71 0.376603
Target:  5'- uUGCGCgAGCuGUgcucaaGGAUCGGUGUauGCCaGUCg -3'
miRNA:   3'- -ACGCG-UCG-CA------UCUAGCCACA--CGG-CAG- -5'
23275 5' -56.7 NC_005259.1 + 33724 0.73 0.296919
Target:  5'- cUGCGCGaugaugucGCGUGGAgCGGUGUGCaCGa- -3'
miRNA:   3'- -ACGCGU--------CGCAUCUaGCCACACG-GCag -5'
23275 5' -56.7 NC_005259.1 + 47173 0.8 0.097496
Target:  5'- cGUaGCGGCGaAGGUCGGcgGUGCCGUCg -3'
miRNA:   3'- aCG-CGUCGCaUCUAGCCa-CACGGCAG- -5'
23275 5' -56.7 NC_005259.1 + 28311 1.08 0.000989
Target:  5'- cUGCGCAGCGUAGAUCGGUGUGCCGUCc -3'
miRNA:   3'- -ACGCGUCGCAUCUAGCCACACGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.